Gene detail information of Glyur000480s00023794 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14740.1 | 0 | Protein of unknown function (DUF1423) |
| NR | XP_003524851.1 | 0 | PREDICTED: protein OBERON 3-like [Glycine max] |
| Swissprot | tr|Q94B71|OBE3_ARATH | 0 | Protein OBERON 3 |
| trEMBL | tr|I1K3D1|I1K3D1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G26980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00480 | 69964 | 73952 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000480s00023794.1 | PF07227.6 | DUF1423 | 354 | 802 | 2.90E-165 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.878 |
| SRR1783600 | control | 20.965 |
| SRR1783602 | moderate drought stress | 20.997 |
| SRR1811619 | moderate drought stress | 20.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.122 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.808 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.009 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.559 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.327 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 78.412 |
| SRR2868004 | Drought Stress (root) | 90.062 |
| SRR2967015 | Control (root) | 93.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.202 |
| SRR9715740 | Leaf | 28.433 |
| SRR9715741 | Leaf | 38.443 |
| SRR9715739 | Root | 9.803 |
| SRR9715742 | Root | 39.648 |
| SRR9715743 | Root | 35.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.658 |
| SRR8749028 | MeJA induced 9h | 37.564 |
| SRR8749029 | MeJA induced 9h | 44.746 |
| SRR8749030 | Uninduced | 17.749 |
| SRR8749031 | Uninduced | 31.257 |
| SRR8749032 | Uninduced | 20.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.758 |
| SRR8400027 | Control - Root | 57.429 |