Gene detail information of Glyur000480s00023785 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18270.1 | 6.00E-52 | cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene |
| NR | XP_004504578.1 | 1.19E-108 | PREDICTED: l-Ala-D/L-Glu epimerase-like [Cicer arietinum] |
| COG | YP_003269863.1 | 1.00E-23 | mandelate racemase/muconate lactonizing protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|B9I2J6|AXEP_POPTR | 2.00E-71 | L-Ala-D/L-amino acid epimerase |
| trEMBL | tr|I1KRS2|I1KRS2_SOYBN | 3.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G10010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00480 | 30975 | 34571 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000480s00023785.1 | PF02746.11 | MR_MLE_N | 109 | 220 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.004 |
| SRR1783600 | control | 34.207 |
| SRR1783602 | moderate drought stress | 33.937 |
| SRR1811619 | moderate drought stress | 33.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.727 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 65.377 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.711 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.586 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.027 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.043 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.370 |
| SRR2868004 | Drought Stress (root) | 27.907 |
| SRR2967015 | Control (root) | 34.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.914 |
| SRR9715740 | Leaf | 1.613 |
| SRR9715741 | Leaf | 1.988 |
| SRR9715739 | Root | 20.111 |
| SRR9715742 | Root | 30.574 |
| SRR9715743 | Root | 25.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.610 |
| SRR8749028 | MeJA induced 9h | 4.889 |
| SRR8749029 | MeJA induced 9h | 5.509 |
| SRR8749030 | Uninduced | 2.260 |
| SRR8749031 | Uninduced | 1.941 |
| SRR8749032 | Uninduced | 3.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.174 |
| SRR8400027 | Control - Root | 29.882 |