Gene detail information of Glyur000480s00023784 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18260.1 | 8.00E-41 | Reticulon family protein |
| NR | AFK35389.1 | 8.03E-84 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LJQ5|RTNLI_ARATH | 2.00E-52 | Reticulon-like protein B9 |
| trEMBL | tr|I3S547|I3S547_LOTJA | 3.00E-84 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00480 | 26949 | 29252 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000480s00023784.1 | PF02453.12 | Reticulon | 55 | 117 | 2.40E-14 |
| Glyur000480s00023784.1 | PF02453.12 | Reticulon | 125 | 175 | 1.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.339 |
| SRR1783600 | control | 1.338 |
| SRR1783602 | moderate drought stress | 1.645 |
| SRR1811619 | moderate drought stress | 1.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.197 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.995 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.842 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.073 |
| SRR2868004 | Drought Stress (root) | 13.875 |
| SRR2967015 | Control (root) | 12.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.332 |
| SRR9715740 | Leaf | 0.532 |
| SRR9715741 | Leaf | 1.484 |
| SRR9715739 | Root | 0.263 |
| SRR9715742 | Root | 2.496 |
| SRR9715743 | Root | 2.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.037 |
| SRR8749029 | MeJA induced 9h | 0.032 |
| SRR8749030 | Uninduced | 0.031 |
| SRR8749031 | Uninduced | 0.090 |
| SRR8749032 | Uninduced | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.183 |
| SRR8400027 | Control - Root | 4.308 |