Gene detail information of Glyur000479s00019701 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20080.1 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_007131706.1 | 0 | hypothetical protein PHAVU_011G035100g [Phaseolus vulgaris] |
| Swissprot | tr|B6ETT4|SYT2_ARATH | 0 | Synaptotagmin-2 |
| trEMBL | tr|V7AEN7|V7AEN7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00479 | 79922 | 88797 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000479s00019701.1 | PF00168.25 | C2 | 262 | 343 | 6.60E-23 |
| Glyur000479s00019701.1 | PF00168.25 | C2 | 420 | 480 | 2.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.945 |
| SRR1783600 | control | 20.516 |
| SRR1783602 | moderate drought stress | 21.170 |
| SRR1811619 | moderate drought stress | 20.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.897 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.328 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.921 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.595 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.421 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 76.948 |
| SRR2868004 | Drought Stress (root) | 72.030 |
| SRR2967015 | Control (root) | 62.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.495 |
| SRR9715740 | Leaf | 22.076 |
| SRR9715741 | Leaf | 30.076 |
| SRR9715739 | Root | 8.187 |
| SRR9715742 | Root | 20.427 |
| SRR9715743 | Root | 19.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.734 |
| SRR8749028 | MeJA induced 9h | 81.703 |
| SRR8749029 | MeJA induced 9h | 79.405 |
| SRR8749030 | Uninduced | 61.063 |
| SRR8749031 | Uninduced | 57.263 |
| SRR8749032 | Uninduced | 53.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.930 |
| SRR8400027 | Control - Root | 51.581 |