Gene detail

Gene detail information of Glyur000479s00019695.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16730.1	0	glycosyl hydrolase family 35 protein
NR	XP_004505828.1	0	PREDICTED: beta-galactosidase 13-like [Cicer arietinum]
COG	YP_008089223.1	4.00E-42	Beta-galactosidase [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9SCU8\|BGA14_ARATH	0	Beta-galactosidase 14 (Precursor)
trEMBL	tr\|G7JNE5\|G7JNE5_MEDTR	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000479s00019695.1
ATGTCGCCACCTCTCAAAGTTCTTCTTTTCTTTACCTTGCTTTCCATCATTGTTTCTTTGACTATTGTTGCCGGCGCCGATAAGGACGATGACAACGAAGACGCCGGCGGCGATGTTGATATTGTCATTAATGATAAGGACAATACTGCCGTGACTTATGACGGAAGGTCACTCATTATCAATGGGAAACGATCACTTCTCTTCTCGGGTTCNGTTCATTACCCGCGAAGCACCCCAGAAATGTGGCCAGATATTCTTGATAAGGCAAGACATGGAGGTTTAAACGTGATCCAAACTTACGTATTTTGGAATGGTCATGAGCCCGAAAAAGGCAAGCTCAATTTCGAAGGCAATTATGATATAGTGAAGTTCATTAAGCTCGCACAAGAGAAAGGATTGTATGTAACCCTCAGGGTTGGGCCTTTCATCCAAGCTGAATGGAATCATGGAGGACTTCCGTATTGGCTAAGAGAGGTCCCTAACATCATATTCCGCTCTAACAATGAACCCTTTAAGAAGCACATGAAAGAATACGTGACAACTATTATAGAAAAGATGAAAGATGAGAAGCTCTTTCTTCCTCAAGGAGGCCCCATCATCTTAACACAGATTGAGAATGAGTACAACCANATCCAACTTGCTTATGAAGCGGATGGAGACAGTTATGTCCAGTGGGCAGCTAAAATGGCAGTTTCATTGGATACTGGAGTTCCATGGCTCATGTGCAAGCAAAAGGATGCTCCTGATCCAGCCCAAACAAACCATACAAGCCTGCCATATGGACTGAAAATTGGACTGCTCAAAGACATTGCCTTCTCAGTTGCCCGTTTCTTCTCTAAGAATGGCTCTTTGGTCAACTACTATATGTACCATGGTGGAACGAACTTTGGTAGAACGAGCTCCGCCTTTACAACAACTCGGTATTACGATGAAGCTCCTCTTGATGAGTTCGGTCTGCAGAGAGATCCAAAATGGAGCCATTTGAAGGATGTGCACAAGGCTTTGAACCTATGTAAGAGAGCTCTACTCACAGGTGATCCTAGTGTCAAAAGATTGAGCCAATTTCATGAGATTATAGTCTATGAGAAGCCAGGAAGTGATATATGTGCAGCTTTCATCACTAACAACCACACCAAAACGCCAAAAACTATAAATTTCAGAGGTTCAGACTATATTTTGCCACCACGTTCCATCAGCATCCTCCCTGATTGCAAGTCTTTGGTGTTCAACACTCAAATGATTGTTTCACAACATAATACAAGAAACTTCGAGAAGTCAAAGGCTGCAAACAATCACAAGTGGGAGGTGTATTCTGAGCCTATTCCAACTACCAANCAATTGCCATCCAATAAAAAACTTCCTGCAGAGCTTTACAGCTTGCTTAAAGACACCACTGACTANGGATGGTACACCACGAGTGTGGAATTGGGTCCTGAAGACTTGCCAAAGAAGAATGCGATATCCCCCGTTCTTCGTATTATGAGCCTTGGCCATTCATTGCTTGCCTTTGTAAATGGAGAATACCTTGGATCTAATCATGGTAGCCATGAGGAGAAAGGTTTTGAATTCCAGAAACCTGTAAACTTCAAGGTTGGAGTTAACCAGATAGCTATCTTGGCATGCACAGTAGGACTCCCCGATAGTGGAGCATACATGGAGCATAGATATGCTGGACCCAAGGCTATAACCATCCTTGGTCTGAACTCTGGAACAATTGACCTGACTCTTAATGGTTGGGGTCATCAGGTTGGTCTTCAAGGTGAAAAACTTAGCATTTTCACTGAGGAGGGATCAAAGAAAGTAGATTGGAAGGATTCCAAGGGACGTGGACCACCTCTCTCTTGGTACAAGACAAATTTTGGAACCCCAGAGGGAAGGCAACCTGTTGCAATCAGGATGACTGGTATGGCGAAGGGAATGCATTGGTCGTCACTGGTTGAGCTATCTCTCTCCTCTCGGGCAACCAACTCAGTCAGAGAGGAGGCAGCAAGTCCAGAAAATGTTGTCATCCTAAATGTCAATAGAGATACAGTATGCAGTTTCATCACAGAGCATCATCCTCCCAATATTAAGTCATGGGCAAGTAAGAACCAGAAACTCACACCTGTTGCAGAAAGTTTGGTGCCAGAAGCTTTACTCAAGTGTCCAAACCACAAAACCATTGTGGCTGTGGAGTTTGCAAGTTATGGTGATCCTTTGGGTTTTTGTGGAGGCTTTACTAAGGGCAAATGCCATGCACCTACCACCCAGAAGATTGTTGAGCAGCATTGCTTAGGAAAAGAAGTTTGTTCGGTTCCAATGAACAAAGCAATCTTCGGCAATGATGCTTGCCCAAATGTGATAAAGGGACTTGCAATCCAAGTGAAGTGTGGCTCAGAGAAACCTGCCAGTAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00479	46834	53420	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000479s00019695.1	PF01301.14	Glyco_hydro_35	57	255	7.00E-78
Glyur000479s00019695.1	PF01301.14	Glyco_hydro_35	268	334	3.60E-18
Glyur000479s00019695.1	PF02140.13	Gal_Lectin	713	790	1.60E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.058
SRR1783600	control	0.071
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.139
DRR006520	Root Summer glycyrrhizin high producing strain	0.131
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.719
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.719

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.075
SRR2868004	Drought Stress (root)	0.020
SRR2967015	Control (root)	0.014

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.305
SRR9715740	Leaf	0.050
SRR9715741	Leaf	0.101
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.028
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.018
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.015
SRR8400027	Control - Root	0.016