Gene detail information of Glyur000479s00019689 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38580.1 | 2.00E-57 | farnesylated protein 6 |
| NR | XP_003607174.1 | 3.58E-91 | Farnesylated protein (ATFP6) [Medicago truncatula] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 3.00E-76 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|G7JMC8|G7JMC8_MEDTR | 1.00E-91 | Heavy metal transport/detoxification superfamily protein {ECO:0000313|EMBL:AES89371.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00479 | 12341 | 13121 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000479s00019689.1 | PF00403.21 | HMA | 27 | 81 | 1.40E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.010 |
| SRR1783600 | control | 0.872 |
| SRR1783602 | moderate drought stress | 6.221 |
| SRR1811619 | moderate drought stress | 5.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.192 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.415 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.613 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.692 |
| SRR2868004 | Drought Stress (root) | 15.074 |
| SRR2967015 | Control (root) | 68.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.028 |
| SRR9715740 | Leaf | 10.798 |
| SRR9715741 | Leaf | 18.508 |
| SRR9715739 | Root | 55.765 |
| SRR9715742 | Root | 74.337 |
| SRR9715743 | Root | 85.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.468 |
| SRR8749028 | MeJA induced 9h | 7.447 |
| SRR8749029 | MeJA induced 9h | 16.620 |
| SRR8749030 | Uninduced | 10.176 |
| SRR8749031 | Uninduced | 1.538 |
| SRR8749032 | Uninduced | 5.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.534 |
| SRR8400027 | Control - Root | 33.020 |