Gene detail

Gene detail information of Glyur000478s00024553.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68400.1	3.00E-51	leucine-rich repeat transmembrane protein kinase family protein
NR	XP_003619794.1	0	Nodulation receptor kinase [Medicago truncatula]
COG	YP_004445807.1	2.00E-13	cellulosome anchoring protein cohesin subunit [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	1.00E-84	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|G7KPP5\|G7KPP5_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES76012.1}

Sequence

Transcript Sequence

>Glyur000478s00024553.1
ATGGTCTTGTTGTTGTGCATTGAATTTGAGATCAAGGAAATCCACCCAGAAGAAAGAGATGCTTTGTTGCTCATAAGGGATTCATTGAATTCTTCTGTGAATTTGCATGGGAATTGGACAGGTCCTCCTTGTATAGACAACCTTAGTAGGTGGTTTGGTATCACTTGTTCCAATTGGCATGTTGTTCACATTGTCCTTGAAGGTGTTAGCCTTAGTGGAAACTTGCCTCCAACATTCCTCCAAAACATAACTTTCTTGACCCAAGTTGATTTGAGAAACAATGCACTTTTTGGGGCACTACCAAACCTCAATGGCTTGGTTTTCTTGGAAAAGGTGTTGCTATCTTTCAACCATTTCTCAGGGTCAATTCCTTTGGAGTATGTTGAGCTTCAAAGTCTACAAGTGTTGGAGCTGCAAGAGAATTACTTGGATGGTCAAGTTCCACCTTTTGATCAACCATCATTGACAGGTTTCAATGTGTCATTCAATCATTTGGTGGGGCCAATTCCTGAAACTTCTGTGCTCCAAAGGTTTCCAAAGAGTTGCTTTGATAACAATTCAGATCTTTGTGGAAAGCCATTGGATAATTTGTGTCCTGCTGAGCCTCCTTCTGCTCCATTTTCTGCACCACCTCCTGCTGTTATTCCACCAGTGGAGAAACATAAGAAGAGACTTCAAGTGTGGGTTATTGCTTTGATTGCTGTTGCAGCTGCACTGTTTCTTTTTCTGATGATTATTGCTTTCTGGTTTTGGTATGTTTTTGGAGCATGGGCAAAGAAGATGGTGTCTGACATAGGGCACAGTGAAGATTCTGAAAGATTAGGCAGATTAGAATTTTCCAACAAGAAATTGCCAGTTTTTGACTTGGATGATTTGTTAAGGGCATCAGCAGAAGTGCTAGGGAGAGGGAATTTAGGCATTACATACAAAGCAACACTTGAAACTGTAAAGAGACTTAACCACATGAATGAATTGAGCAAGAAGGAGTTTCTCCAGCAGATGCAATTGCTAGGACAGATAAAGCATGAGAATCTAGTAGAAATTGTCTCNTTCTATTATTCAGAGGAGCAAAAGCTGGTCATATATGAACTTATCTCTGATGGCACTTTAATGGCTATCATCAAAGACATAGCAAAGGGTCTTGCTTTCCTTCACCATTCTTTGTCTTCTCACAAGGTCCCTCATGCAAACCTCAAATCATCCAATGTCTTAATCCACCAAGATAACCAAGGTTACCATTCCAAGCTCACAGACTATGGATTCTTGCCTCTACTCCCATCCAAGAAAAATGCAGAAAAGCTAGCCATAAGCAAGTCACCAGAATTTGTCAAAGGGAAAAGGTTGACACACAAAACTGATGTCTATTGCTTTGGTATCATTATGCTAGAGATTATAACTGGCAAAGTTCCTGGTCATATCTTAGGTGAAGTTGAGGAAACAACAAACAATAATGATCTTTCAGATTGGGTAAGAACTGTGGTGAACAATGATTGGTCCACTGATATATTGGATTTAGAAATACTAGCAGAAACAGAAGGGCATGATGCAATGTTGAACCTTACTGAGTTAGCTCTTGANTGTACAGATATGGCACCAGAGAAAAGGCCTAGGATGAGTGTAGTTTTGAGTAGAATTGAAGAGATTGAGCAAATGAAAAAAAGAGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00478	153321	155804	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000478s00024553.1	PF08263.7	LRRNT_2	16	57	2.10E-05
Glyur000478s00024553.1	PF07714.12	Pkinase_Tyr	298	543	1.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.266
SRR1783600	control	0.238
SRR1783602	moderate drought stress	0.772
SRR1811619	moderate drought stress	0.616

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.150
DRR006520	Root Summer glycyrrhizin high producing strain	0.172
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.038
DRR006524	Root Summer glycyrrhizin low producing strain	0.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.021
SRR2868004	Drought Stress (root)	4.530
SRR2967015	Control (root)	2.962

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.042
SRR8749028	MeJA induced 9h	0.780
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	0.118
SRR8749031	Uninduced	0.068
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.632
SRR8400027	Control - Root	0.619