Gene detail information of Glyur000478s00024539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17840.1 | 0 | white-brown complex homolog protein 11 |
| NR | XP_007152500.1 | 0 | hypothetical protein PHAVU_004G135400g [Phaseolus vulgaris] |
| COG | YP_005371294.1 | 3.00E-37 | enoyl-CoA hydratase [Corallococcus coralloides DSM 2259] |
| Swissprot | tr|Q8RXN0|AB11G_ARATH | 0 | ABC transporter G family member 11 |
| trEMBL | tr|V7C2W2|V7C2W2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW24494.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00478 | 7517 | 78167 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000478s00024539.1 | PF00005.22 | ABC_tran | 67 | 196 | 3.30E-13 |
| Glyur000478s00024539.1 | PF01061.19 | ABC2_membrane | 351 | 477 | 1.20E-16 |
| Glyur000478s00024539.1 | PF13766.1 | ECH_C | 542 | 595 | 1.30E-07 |
| Glyur000478s00024539.1 | PF13766.1 | ECH_C | 864 | 951 | 1.90E-16 |
| Glyur000478s00024539.2 | PF00005.22 | ABC_tran | 67 | 196 | 2.20E-13 |
| Glyur000478s00024539.2 | PF01061.19 | ABC2_membrane | 351 | 477 | 4.80E-16 |
| Glyur000478s00024539.2 | PF13766.1 | ECH_C | 645 | 732 | 1.40E-16 |
| Glyur000478s00024539.3 | PF00005.22 | ABC_tran | 67 | 196 | 1.80E-13 |
| Glyur000478s00024539.3 | PF01061.19 | ABC2_membrane | 351 | 477 | 6.40E-17 |
| Glyur000478s00024539.3 | PF13766.1 | ECH_C | 542 | 629 | 1.10E-16 |
| Glyur000478s00024539.4 | PF00005.22 | ABC_tran | 67 | 196 | 1.80E-13 |
| Glyur000478s00024539.4 | PF01061.19 | ABC2_membrane | 351 | 477 | 6.40E-17 |
| Glyur000478s00024539.4 | PF13766.1 | ECH_C | 542 | 629 | 1.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.075 |
| SRR1783600 | control | 0.085 |
| SRR1783602 | moderate drought stress | 0.241 |
| SRR1811619 | moderate drought stress | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.957 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.012 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.503 |
| SRR9715740 | Leaf | 14.266 |
| SRR9715741 | Leaf | 12.697 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.709 |
| SRR9715743 | Root | 0.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.281 |
| SRR8749028 | MeJA induced 9h | 0.087 |
| SRR8749029 | MeJA induced 9h | 0.188 |
| SRR8749030 | Uninduced | 0.265 |
| SRR8749031 | Uninduced | 0.116 |
| SRR8749032 | Uninduced | 0.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.022 |
| SRR8400027 | Control - Root | 1.024 |