Gene detail

Gene detail information of Glyur000477s00024408.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22840.1	1.00E-72	growth-regulating factor 1
NR	KEH39998.1	0	growth-regulating factor [Medicago truncatula]
Swissprot	tr\|Q6AWY3\|GRF6_ORYSJ	2.00E-101	Growth-regulating factor 6
trEMBL	tr\|A0A072VEY4\|A0A072VEY4_MEDTR	0	Growth-regulating factor {ECO:0000313\|EMBL:KEH39998.1}

Sequence

Transcript Sequence

>Glyur000477s00024408.1
AAATCTGTCTTTCCCTTTCCATTTCTTCCTCTTCTCTCACAAAAGAAAGTTGACTTGACTGTTGTTTTTTATTTTGCCTTCAAAATCATAACCTATCTATTTTCTCTAAATGTTTCACACCCAACATAAGTCTTCTGCTTCTGCCACTCTTTTTTTTTCTTGTTTCTTTTTAAGCATGCTCTGAAGCAAAGCAAGCAACTTTTTTATTCTTTTTCAATTTTTCTCTTTTTAAATTCTCAATTTTTCTGTGTTTCTACCCTGTTTGTGCTTAGTTACCTTGTGGGGTATTAATATTATTTGGATTTCACTTGCAGGTTGTTACAGTAGTTCGGGAAGCAGTAGCATGGTGCATGGGGGTTATGGTGGTGGGAGAGGGCCATTCACACCGTCACAGTGGATGGAGCTGGAACACCAGGCACTGATCTACAAGTACATCACTGCAAATGTGCCCATTCCTTCCAATTTGCTCATCCCCATCCGAAAAGCGCTTGATTCTGCTGGCCTCTACAACTTCTCTACCGGATTCCTCAGACCCAATGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACCGATCCGGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCGAGAGATGCCGTTGTGGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCGGGGCCACCACCACCACCACCACCACAACCACAACCAATACTACTCCAAATGGTTCAAAGCTCAATACTCCAAATGGCAACAGTGCATCTAGTAGCCTTGCCTTTGCAGAACCTAAGAATATGCATAACCTTCTTGCACCNGATAATAATACTTCTGCTGCTGCCAGCACCATCAACAGGATGTTCATGAATAACAAGGAGAATAACAACGCGAGTGAGAGGATGCAGGATGGCCCTGCACTTCCAATGCTGCCTCCCACTCTCGAGTTGAAACCAAAGGAAAGCCATCCCTTTATGCTTCACAAACAGGAAATTAATCCTTATGATGAATCATCATCCTCAAGGAATAACAATGAGTTTGGGCTTGTCACTTGTGATTCCCTGCTTAACCCTTCACAGAAAAGCCCCACCTTGCTTGACAGCAGAAGCTATGGTTCTTCACAGAACCCTGCCAACCGAGACGCGGGGTCCCAACATTCCCTCAGGCATTTCATTGATGACTGTCCCAAAACACAGTCCAATCATCGCTCCGGTGGTGTTTCGTGGCNGGAGCTCGACATGCAGTCGGATAGGACACAGCTATCGATTTCCCTTCCAATGACGTCCTCAGACTTCATGTCATTCACTACTTCCTCACCCACCAACGAAAAGCTCACATTGTCACCTCTCAGGCTGTCAAGGGAGTTAGACCCAATTCAAATGGGTTTGGGNGTGGGAAGTGCTCTCAACAATGAATCAAACACTAGCACTACTAATACTACTACTAGGCAAGCTAATTGGATCCCAATTACTTGGGAGAGTTNCATGGGTGGTCCTCTTGGAGAGGTTCTGAATCTTAGTACTAATAACAACAACTACAACAATGCTGCAGCAAGTGATGATCACTGTGCCTCTTCTGCTCTGAACCTGATGAGTGATGGGTGGGACAATAGTCCTCCAATGGGGTCATCTCCAACTGGGGTCCTTCAGAAGACAGCATTTGGATCACTCTCCAATAGCAGTGCTGGGAGCAGTCCAAGAGGGACAGACAACAAGACTCAAGAATTGTGCAATGACCTCCTTGGATGAATGTTTCTTCCTACATACCCGCGCCTTGTGAAGAAGACAATGGAGGGAGGGAGAAAAGAACAGAAATTTGTTCATGACTTTAATTATCAGTTCAGTTTTATATATATATGGTAATCTCAGAATTTGGAAAAGATGTGTTTTTTTTCTGTAGTAGTGATTAGTGATTGCCTTGCTTGGCCTCATAATTTGGGTGTGTAGGTTCTTTCTTGGTTTGTTGACTTTTTTTTTTCCACTTTGTATCTGTTTCATGTGCTGTGACTGTGAGAGGGTGTTTTGGCAAGTTTGTATGTAACAACAGTAAGTAAGTGATGTTGGTTGGAGTGTCAAAGTGTGGATTTTGGTGTTTATGGGTCAACACAAGTGGGGACTCTGATTGCATGACGTTACCGTAATTATTAATTGAGAGTTACCAATTCGTGGGACTCACGGTGTGCACATGGAATAAGGGGAAGAAAAGTTAATGCCAACCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00477	143133	146784	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000477s00024408.1	PF08880.6	QLQ	11	47	1.10E-17
Glyur000477s00024408.1	PF08879.5	WRC	81	125	5.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.435
SRR1783600	control	12.537
SRR1783602	moderate drought stress	16.595
SRR1811619	moderate drought stress	16.495

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.921
DRR006520	Root Summer glycyrrhizin high producing strain	4.701
DRR006521	Root Winter glycyrrhizin high producing strain	4.060
DRR006522	Root Winter glycyrrhizin high producing strain	3.911
DRR006523	Root Summer glycyrrhizin low producing strain	4.162
DRR006524	Root Summer glycyrrhizin low producing strain	3.711
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.657
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.839
SRR2868004	Drought Stress (root)	4.500
SRR2967015	Control (root)	7.174

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.408
SRR9715740	Leaf	3.014
SRR9715741	Leaf	3.949
SRR9715739	Root	1.231
SRR9715742	Root	3.252
SRR9715743	Root	2.121

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.422
SRR8749028	MeJA induced 9h	2.453
SRR8749029	MeJA induced 9h	1.242
SRR8749030	Uninduced	0.431
SRR8749031	Uninduced	0.830
SRR8749032	Uninduced	1.172

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.285
SRR8400027	Control - Root	7.244