Gene detail information of Glyur000477s00024406 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44910.1 | 1.00E-149 | pre-mRNA-processing protein 40A |
| NR | KHN17176.1 | 0 | Pre-mRNA-processing factor 40 like A [Glycine soja] |
| Swissprot | tr|B6EUA9|PR40A_ARATH | 0 | Pre-mRNA-processing protein 40A |
| trEMBL | tr|K7M5R6|K7M5R6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G10071.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00477 | 115986 | 130210 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000477s00024406.1 | PF00397.21 | WW | 245 | 272 | 7.80E-10 |
| Glyur000477s00024406.1 | PF00397.21 | WW | 288 | 313 | 8.50E-08 |
| Glyur000477s00024406.1 | PF01846.14 | FF | 460 | 509 | 5.50E-15 |
| Glyur000477s00024406.1 | PF01846.14 | FF | 528 | 577 | 8.30E-15 |
| Glyur000477s00024406.1 | PF01846.14 | FF | 596 | 644 | 1.70E-07 |
| Glyur000477s00024406.1 | PF01846.14 | FF | 669 | 724 | 2.70E-08 |
| Glyur000477s00024406.1 | PF01846.14 | FF | 805 | 852 | 3.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.335 |
| SRR1783600 | control | 31.439 |
| SRR1783602 | moderate drought stress | 39.803 |
| SRR1811619 | moderate drought stress | 39.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.901 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.199 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.791 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.261 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.914 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.798 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.415 |
| SRR2868004 | Drought Stress (root) | 42.007 |
| SRR2967015 | Control (root) | 44.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.731 |
| SRR9715740 | Leaf | 27.450 |
| SRR9715741 | Leaf | 26.054 |
| SRR9715739 | Root | 1.783 |
| SRR9715742 | Root | 12.044 |
| SRR9715743 | Root | 10.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 121.665 |
| SRR8749028 | MeJA induced 9h | 82.982 |
| SRR8749029 | MeJA induced 9h | 114.109 |
| SRR8749030 | Uninduced | 65.166 |
| SRR8749031 | Uninduced | 87.880 |
| SRR8749032 | Uninduced | 72.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.184 |
| SRR8400027 | Control - Root | 35.029 |