Gene detail

Gene detail information of Glyur000477s00024403

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59540.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004498958.1	0	PREDICTED: centromere-associated protein E-like [Cicer arietinum]
Swissprot	tr\|Q8S949\|NACK2_TOBAC	2.00E-83	Kinesin-like protein NACK2
trEMBL	tr\|A0A072VEY8\|A0A072VEY8_MEDTR	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000477s00024403.1
ATGGAGAAGATCTGCGTCGCCGTTCGAGTTCGGCCTCCGGTTTCCGAAGACTCCTTCAGTGGAAGCTTCTGGAAGGTCGAAGATAACCGCATCTCTCTTCACAAGATCCATGGCACTCCACTCTCTGGCTCTTCTTATGCTNTCGATCATATATTCNATGAAACTAGCACTAATGCTAGTGTCTACGAGCTCCTCACCAAGGATGTCATTCTCGCCGCGCTCGATGGCTTCAACGGAACTGCATTTGCTTATGGGCAGACAAGTAGTGGCAAGACGTTCACCATGAATGGTTGTGAGAGTGACCCAGGAATGTCTGATCGAGAGTTTTTGATTCGAGTTTCCTACATGGAGATCTATAATGAAGAAATTAATGACCTTCTCGTTGTTGAGAATCAGAAATTGCAAATTCATGAGAGTCTAGAGCGTGGAGTATTTGTTGCTGGGCTCCGAGAGGAAATTGTCAATAATGCCGAACAAGTGCTAAATCTCATTAAAGCAGGGGAAGCTAACAGGCACTTTGGTGAGACAAATATGAATGTAAGGAGTAGCAGATCACATACAATATTTAGAATGGTGATTGAAAGCAAGGGGAAAGATTCCAATTCTTCTGATGATTGTTCAATTAGTGACATTGTTCGAGTTTCAGTTTTGAATTTAGTAGACCTAGCTGGCTCTGAAAGAATTGCAAAGACCGGAGCTGACGGAGTACGTTTAAAAGAAGGAAAATATATTAACAAGAGCTTGATGGTTCTGGGAAATGTTATTAACAAACTAAGCGATGGTTCTAAACAAAGGGGGCATATCCCATATCGTGATAGTAAATTAACTCGTATACTCCAACCTGCTCTTGGTGGTAATGCCAAAACGTCCATTATTTGCACCGTAGCACCAGAAGAAATTCACATTGAAGAAACAAAGGGAACTCTTCAGTTTGCTAGTAGAGCCAAACGCATCACGAATTGTGTTCAAGTGAATGAGATTTTGACAGATGCAGCCTTGTTAAAGCGGCAACAGTTAGAGATAGAAGAGCTACGTAAGAAACTTCAGGGATCCCATGCTGAGGTGCTCGAGCAAGAGATTCTTAAACTCAGGAACGATTTGCTCAAGGCAGGTTTTACATTTCAATATGAAATGGAGCGTGGGAAGCTTGAAATGGAACTGGAAGAGGAGAGGAAATCACGTAATCAATGGATTAGGGAGCAACGGATGAAAATTGAAAATTCCAGTACTACATCATTCTCAGACTGTGGAACGATCGACAATCAGGGACTGGGATCTTTGAGGCACGGATTTATGGAAGAGTACAACGACATTAACAGTACATCTCAAGGAGATATATTTAAATCTCCCTGTTTAAATACAGCTCCCAGTGCTTTTGTTGCCAAGCGATCAAAATATTCAACATTGCCAGATTGCAGCCCTCTTCCAGATGCTTTCAGCAATGTGGCTGATGAAGATATGTGGTTGAAAATGAACCAGGGTTATGTTGCAGACCTTGATTCACTTCAAACTACTCCCACTCGAAAAGTTCAATCATTCCCAGAAAGTGATACAACTCCTGGTTGTATAAGTCAAATTGAAAAGTATGAACGAGAGGTTCAAGATTTGAGAAGACAACTGGAACTTGCTACTGAAAAGATAAATGAACTGGAGAAAAAACATTCAGAGGAAGTACCGTCAAGCAAGCAATTAATGGGTGAGAGCCCAAAACATCAACGAGAAACACAACTAATTCAAGAATTGCCTCCGAGGTTATCTGAGTCTGTGGAAAACTTCAAAGGCAGCTTTGAGGAGATTTTATCAGTAATGCAGAGTTTAGCATCGGGTGGCAAATTGTCGACTGCAAAAATGTTTTCGACCATGAGTGAAGTTGGTGCACAGCTATTTGCAACTTTGGAAGCCCACTTTACAGTGAACATGAATGGTGAAAAGTCTTCCACTGGGAACTATGCTTTGATCCAGGAACAACAAAAAGAGTTTCATGAGAGGATGAATAACTTAATTACATCATTGAAGTTATCAGAAAGCTCAATAACAGGAAAGCAAGAGAGGAACCCTTTGTGCAGCTTTGAACACAAGGGGTCTGGTTTGGGAGGAGAAATTGCTTACTCAAAGGATTTAAATGAAAGATATGAAAGCATGGAAAAGGAGTTACTACTTTTGAAGGACGAAAGAGACTCTTTGCTACTGAAGTTCTCTGAATCATCAGAGAAATTTGCAATTGTTTCAAGCCAAAAGGAAAATGCTTTGAAAGATTTAAACACTGAAGTACAGAGAAGGAAAAATCTAGAAGGGGATCTTAAGCAGTTTATTGCAGATTTTACCTGTCGTCAGAAATCACACATTTCCTTCCATAGTGAACATAAGACCAAAATTGATAAATGGAGAGACCAGACTACAATTTCAATTTCAGTGCCCAAGTCTTTTGGGTGTCAGGACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00477	102586	109094	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000477s00024403.1	PF00225.18	Kinesin	30	318	1.10E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.894
SRR1783600	control	1.806
SRR1783602	moderate drought stress	1.662
SRR1811619	moderate drought stress	1.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.149
DRR006520	Root Summer glycyrrhizin high producing strain	2.271
DRR006521	Root Winter glycyrrhizin high producing strain	1.128
DRR006522	Root Winter glycyrrhizin high producing strain	1.159
DRR006523	Root Summer glycyrrhizin low producing strain	1.021
DRR006524	Root Summer glycyrrhizin low producing strain	1.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.665
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.657
SRR2868004	Drought Stress (root)	6.690
SRR2967015	Control (root)	7.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.475
SRR9715740	Leaf	0.123
SRR9715741	Leaf	0.535
SRR9715739	Root	0.417
SRR9715742	Root	0.554
SRR9715743	Root	0.629

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.711
SRR8749028	MeJA induced 9h	9.893
SRR8749029	MeJA induced 9h	9.093
SRR8749030	Uninduced	1.733
SRR8749031	Uninduced	1.100
SRR8749032	Uninduced	1.900

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.057
SRR8400027	Control - Root	7.020