Gene detail information of Glyur000477s00024401 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49780.1 | 3.00E-07 | phytosulfokine 4 precursor |
| NR | XP_004498978.1 | 1.25E-35 | PREDICTED: phytosulfokines 3-like [Cicer arietinum] |
| Swissprot | tr|Q9M2Y0|PSK3_ARATH | 8.00E-16 | Phytosulfokine-beta (Precursor) |
| trEMBL | tr|A0A097C2Y4|A0A097C2Y4_LOTJA | 2.00E-31 | Phytosulfokine-alpha 3 {ECO:0000313|EMBL:AIS76460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00477 | 75943 | 82432 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000477s00024401.1 | PF06404.7 | PSK | 12 | 81 | 7.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.104 |
| SRR1783600 | control | 48.161 |
| SRR1783602 | moderate drought stress | 51.236 |
| SRR1811619 | moderate drought stress | 50.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.068 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.031 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.179 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.406 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.809 |
| SRR2868004 | Drought Stress (root) | 20.505 |
| SRR2967015 | Control (root) | 30.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.358 |
| SRR9715740 | Leaf | 17.251 |
| SRR9715741 | Leaf | 15.879 |
| SRR9715739 | Root | 26.159 |
| SRR9715742 | Root | 32.501 |
| SRR9715743 | Root | 25.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.969 |
| SRR8749028 | MeJA induced 9h | 0.100 |
| SRR8749029 | MeJA induced 9h | 0.334 |
| SRR8749030 | Uninduced | 0.441 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.034 |
| SRR8400027 | Control - Root | 43.084 |