Gene detail information of Glyur000477s00024394.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G07410.1 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_003549373.1 | 0 | PREDICTED: cirhin-like isoform X1 [Glycine max] |
| COG | YP_007242718.1 | 1.00E-17 | WD40 repeat-containing protein [Thioflavicoccus mobilis 8321] |
| trEMBL | tr|K7MNK0|K7MNK0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G35220.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00477 | 13323 | 19488 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000477s00024394.1 | PF00400.27 | WD40 | 205 | 232 | 5.60E-05 |
| Glyur000477s00024394.1 | PF00400.27 | WD40 | 286 | 322 | 0.068 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.914 |
| SRR1783600 | control | 15.982 |
| SRR1783602 | moderate drought stress | 13.675 |
| SRR1811619 | moderate drought stress | 13.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.589 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.073 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.337 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.843 |
| SRR2868004 | Drought Stress (root) | 30.398 |
| SRR2967015 | Control (root) | 28.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.142 |
| SRR9715740 | Leaf | 17.409 |
| SRR9715741 | Leaf | 13.639 |
| SRR9715739 | Root | 12.709 |
| SRR9715742 | Root | 24.696 |
| SRR9715743 | Root | 23.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.215 |
| SRR8749028 | MeJA induced 9h | 52.118 |
| SRR8749029 | MeJA induced 9h | 45.329 |
| SRR8749030 | Uninduced | 10.403 |
| SRR8749031 | Uninduced | 5.007 |
| SRR8749032 | Uninduced | 5.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.029 |
| SRR8400027 | Control - Root | 26.505 |