Gene detail

Gene detail information of Glyur000476s00022389.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17330.1	0	glutamate decarboxylase
NR	KHN24164.1	0	Glutamate decarboxylase 1 [Glycine soja]
COG	YP_007243829.1	5.00E-149	glutamate decarboxylase [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q42521\|DCE1_ARATH	0	Glutamate decarboxylase 1
trEMBL	tr\|A8C8H3\|A8C8H3_SOYBN	0	Glutamate decarboxylase {ECO:0000256\|RuleBase:RU361171}

Sequence

Transcript Sequence

>Glyur000476s00022389.1
TAATTGTACAAGTCATCTGTTAATGTTGCATCCATTCCAATACACTCAAACAAACACCATAATTTCCATCTCCACTCATAGTTGTTAATTTCTCTCTCTCTCTCTCTCCACCATGGTTCTCTCCAAGACCGCCTCCGAGTCCGACGTCTCCGTCCACTCAACCTTTGCTTCCCGCTATGTCAGAACTTCACTTCCCAGGTTCAAGATGCCGGAGGAGTCGATACCGAAGGAGGCAGCGTACCAGATCATAAACGACGAATTGATGCTGGATGGGAACCCGAGGCTGAATCTGGCATCGTTTGTGACCACATGGATGGAACCTGAGTGTGACAAGCTCATCATGGCATCCATCAACAAGAACTACGTTGACATGGATGAGTACCCTGTTACTACTGAGCTCCAGAATCGGTGTGTTAACATGATCGCCCATCTTTTTAATGCACCACTTGAAGAGACTGAGACTGCAGTTGGTGTTGGCACAGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGAGTGAAGGCTACTATGTAATGGATCCTGAAAAGGCCGTAGAATTGGTAGATGAGAACACCATCTGTGTTGCTGCTATCCTTGGTTCCACACTAAACGGAGAGTTTGAAGATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAGGAAACTGGATGGGACACTCCTATTCATGTGGATGCTGCTAGTGGGGGCTTCATTGCCCCATTTATTTATCCAGAGCTTGAGTGGGACTTCCGCTTACCACTAGTAAAGAGCATCAACGTTAGTGGCCACAAGTATGGTCTAGTGTATGCTGGAATCGGTTGGGTTATCTGGAGAAGCAAAGAGGACTTGCCTGAAGAACTCATCTTCCACATCAACTATCTCGGAGCTGATCAACCCACCTTTACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTACGAGGGGTATAAAAATGTGATGGAAAATTGTAGGGACAACATGTTAGTACTGAAAGAGGGTCTCGAGAAAATGGGGCGCTTTGACATTGTGTCCAAAGACAATGGTGTGCCTTTGGTGGCCTTCACAATGAAGGACCACACACACTTTGATGAGTTCCAAATCTCTGACTTGCTAAGGCGCTTTGGGTGGATTGTGCCAGCATACACCATGCCCCCAGATGCTCAGCACGTGACCGTGCTCCGTGTTGTCATCAGGGAGGACTTCTCAAGGACCCTCGCAGAGCGCCTTGTGGTTGATGTGGNGAAAGTGCTGCACGAGCTTGATTCACTTCCAGCAAGAGTGATAAGCACTACCAGTGTTACAGTCACTGGAGAGGAANCTGTGAACAATGGCAAGGTAGTGGTTGCTAAAAAGAGTGCTCTTGAGACCCAAAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGCAGAGGAAGAAGCTGAATGACAAGATGAATGGTGTTTGTTAAGAGTCATGATTGGAATGGAACAAGGGTGTGTTTGTGTCTATATGACTATGTCTGCCTTAATAGCATTTTTATTTAATTTAGGCAGTGAGTAAGCAAGTACATTTGATTGAGTCAAGCCATTTCTCTGCTTCGTGTTTTCCATCTTTGTAAGCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00476	145131	151344	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01580	E4.1.1.15, gadB, gadA, GAD	EC:4.1.1.15	Butanoate metabolism	map00650
			Alanine, aspartate and glutamate metabolism	map00250
			beta-Alanine metabolism	map00410
			Taurine and hypotaurine metabolism	map00430
			Quorum sensing	map02024
			GABAergic synapse	map04727
			Type I diabetes mellitus	map04940

Gene Ontology

biological_process

GO:0006536 glutamate metabolic process

GO:0019752 carboxylic acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004351 glutamate decarboxylase activity

GO:0016831 carboxy-lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000476s00022389.1	PF00282.14	Pyridoxal_deC	33	123	3.50E-18
Glyur000476s00022389.1	PF00282.14	Pyridoxal_deC	124	340	2.10E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	91.664
SRR1783600	control	91.856
SRR1783602	moderate drought stress	72.382
SRR1811619	moderate drought stress	71.550

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	104.681
DRR006520	Root Summer glycyrrhizin high producing strain	103.116
DRR006521	Root Winter glycyrrhizin high producing strain	11.359
DRR006522	Root Winter glycyrrhizin high producing strain	11.286
DRR006523	Root Summer glycyrrhizin low producing strain	75.470
DRR006524	Root Summer glycyrrhizin low producing strain	75.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	158.686
DRR006526	Leaf Summer glycyrrhizin high producing strain	159.746

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	359.953
SRR2868004	Drought Stress (root)	320.674
SRR2967015	Control (root)	349.702

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	270.500
SRR9715740	Leaf	239.616
SRR9715741	Leaf	327.908
SRR9715739	Root	190.909
SRR9715742	Root	90.795
SRR9715743	Root	116.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.845
SRR8749028	MeJA induced 9h	68.126
SRR8749029	MeJA induced 9h	41.246
SRR8749030	Uninduced	41.121
SRR8749031	Uninduced	15.105
SRR8749032	Uninduced	10.486

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	273.351
SRR8400027	Control - Root	239.660