Gene detail

Gene detail information of Glyur000476s00022386.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53380.1	0	Concanavalin A-like lectin protein kinase family protein
NR	XP_007146994.1	0	hypothetical protein PHAVU_006G087700g [Phaseolus vulgaris]
COG	YP_004571825.1	7.00E-23	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9LFH9\|LRK81_ARATH	0	L-type lectin-domain containing receptor kinase VIII.1 (Precursor)
trEMBL	tr\|V7BPM9\|V7BPM9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW18988.1}

Sequence

Transcript Sequence

>Glyur000476s00022386.1
ATGCCACCACTTCCCATTCTCCTTTGCTTTCTCAACTTCCTCTTCTTCTCCGCCGCCGCCACTGCCGCCACACAATTCGACTTTGGCACCTTAACACTGAGCACCCTCAAGCTCCTCGGCGCCGCCCACCTCAACAACAACACCGTCAGCCTCACCGGCGACCCCGCCGTCCCCAACTCCGCCGCCGGCAGAGCCCTCTACTCCACCCCCGTCAGGTTCCGGCAACCGGGGAACCCCCTCCCGGCGAGCTTCACCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCCTCCGTCGGCGGCGGACTCGCCTTCCTCATCTCACCGGATGCCACCGCTGCCGGCGACCCCGGCGGGTCCCTCGGCCTTGGAGGCCCCTCCTTCCTCGCCGTCGAATTCGACACCCTCATGGACGTGGAGTTCAACGACATTAACGGGAACCACGTCGGTTTGGACCTCAACGACGTCGTTTCGACCCAGGCCAGTGACTTGGGAGCCCTCGGAATCGACCTCAAGAGCGGCGACACGGTGAACGCGTGGATCGATTACGACGGAAGAAGCAAAGGGTTTCGCGTTTGGGTATCCTACTCCAATGTGAGGCCCAANGACCCGATTTTGAAGTTGGATCTCGATGTGGGTCAGTACGTGAACGAGTTCATGTACGTGGGTTTTTCTGGGTCCACACAGGGTAGCACGGAGGTTCACAGTGTGGAGTGGTGGAGTTTCAGCTCCACCTTTGATTCCACCACGGCGGCGNCGCCACCTCCAACGGCACCTTCATTGGCTCCTTCCGGTCAACAGAAGGAGACTACCAAGTCTTCTTCTTGCCACAGTGGGTTGTGCAAGCAAGGTATGGGAGCAGTTGCTGGGGTTGTCACTGCTGGTGCTTTTGCTTTTGCTCTCTTTGCGGGTGCATTGATTTGGTTGTATTCCAAGAAGGTGAAGCACGTGAAGAAGTTCGATTCGCTTGGGTCGGAGATTATAAGAGCCCCTAAAGAGTTCACCTATAAGGAGCTCAAATTGGCCACAAAGTGCTTCAGTGCCAATAGGATCATTGGTCACGGTGCTTTTGGGACGGTCTATAAGGGGATATTGCCGGAGAGTGGTGACATTGTTGCAGTGAAGAGGTGTAACCATAGTGGTCAGGGTAAGAATGAGTTTTTATCTGAATTGTCCATAATTGGGAGCCTTAGGCATAGGAACTTAGTTAGGCTTCAGGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGATTTGATGCCGAATGGGAGTCTAGATAAGGCCTTGTATGAGGCAAGGATACCTTTACCTTGGCCTCACAGGGTCAAGGTTTTGTTAGGGGTGTCTTCTGTTTTGGCCTACTTGCATCATGAGTGTGAGAACCAGGTGATTCATAGGGACATTAAGACTAGTAACATAATGTTGGATGAAGGGTTCAATGCCAGGCTAGGCGATTTCGGTTTGGCGAGGCAAACGGAGCATGACAAGTCTCCTGATGCCACGGTGGCTGCAGGGACAATGGGATACCTGGCTCCTGAGTATGTGCTCACTGGTAGAGCCACTGAGAAAACTGATGTTTTCAGTTATGGTGCTGTGGCTCTTGAGGTGGCCACTGGGAGAAGACCTATAGAGAAAGATGCCACTGGTGGGGCTGGTGGTAAAGTTGGTGGGGGTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCACCAGGAAGGCAAGTTGCTGATGGCAGCTGATCCAAGGCTTGAGGGTGAGTTTGATGAAGGGGAGATGAGGAGGGTGCTCTTGGTTGGGTTGGCTTGCTCACACCCTGATTCAGTGGCAAGACCCACTATGAGGGGTGTGGTTCAGATGCTGCTGGGTGAGGCTGAAGTGCCTATAGTCCCTAGAACCAAGCCATCAACTAGTTATAGTACTTCCCACCTCTTGATGAGCTTGCAAGACAGTGACTCTGACGGCAATGCTATAATCACCATCTCTACCTCCTCATCAGGGAACATCTTCAATGATAGAGATATAGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00476	141898	143934	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000476s00022386.1	PF00139.14	Lectin_legB	24	244	7.10E-56
Glyur000476s00022386.1	PF00069.20	Pkinase	349	549	3.20E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.015
SRR1783600	control	3.032
SRR1783602	moderate drought stress	1.466
SRR1811619	moderate drought stress	1.406

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.269
DRR006520	Root Summer glycyrrhizin high producing strain	1.285
DRR006521	Root Winter glycyrrhizin high producing strain	0.278
DRR006522	Root Winter glycyrrhizin high producing strain	0.267
DRR006523	Root Summer glycyrrhizin low producing strain	0.757
DRR006524	Root Summer glycyrrhizin low producing strain	0.737
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.352
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.364

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.162
SRR2868004	Drought Stress (root)	1.877
SRR2967015	Control (root)	2.530

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.759
SRR9715740	Leaf	0.074
SRR9715741	Leaf	0.176
SRR9715739	Root	5.111
SRR9715742	Root	2.108
SRR9715743	Root	2.732

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.700
SRR8749028	MeJA induced 9h	0.776
SRR8749029	MeJA induced 9h	0.957
SRR8749030	Uninduced	0.372
SRR8749031	Uninduced	0.318
SRR8749032	Uninduced	0.301

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.204
SRR8400027	Control - Root	4.444