Gene detail information of Glyur000476s00022380 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G37478.1 | 2.00E-15 | TPX2 (targeting protein for Xklp2) protein family |
| NR | XP_004503103.1 | 1.60E-52 | PREDICTED: uncharacterized protein LOC101493967 [Cicer arietinum] |
| trEMBL | tr|G7J8N4|G7J8N4_MEDTR | 8.00E-51 | TPX2 (Targeting protein for Xklp2) family protein {ECO:0000313|EMBL:AES70911.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00476 | 114657 | 116093 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000476s00022380.1 | PF06886.6 | TPX2 | 1 | 46 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.099 |
| SRR1783600 | control | 3.602 |
| SRR1783602 | moderate drought stress | 2.463 |
| SRR1811619 | moderate drought stress | 1.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.365 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.335 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.728 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.006 |
| SRR2868004 | Drought Stress (root) | 4.608 |
| SRR2967015 | Control (root) | 4.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.792 |
| SRR9715740 | Leaf | 0.875 |
| SRR9715741 | Leaf | 0.984 |
| SRR9715739 | Root | 0.102 |
| SRR9715742 | Root | 2.334 |
| SRR9715743 | Root | 2.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.036 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.913 |
| SRR8400027 | Control - Root | 5.724 |