Gene detail

Gene detail information of Glyur000476s00022374

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09670.1	5.00E-104	Oxidoreductase family protein
NR	XP_004503107.1	0	PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cicer arietinum]
COG	NP_522474.1	3.00E-51	hypothetical protein RS01685 [Ralstonia solanacearum GMI1000]
Swissprot	tr\|Q9SZ83\|Y4967_ARATH	2.00E-135	Uncharacterized oxidoreductase At4g09670
trEMBL	tr\|G7J8P4\|G7J8P4_MEDTR	0	Oxidoreductase family, NAD-binding rossmann fold protein {ECO:0000313\|EMBL:AES70921.1}

Sequence

Transcript Sequence

>Glyur000476s00022374.1
CGTTAAATTAGTTGGATCATAAATAAATTAATTATTGAAAAAGGAAAAAAAAGGAAAAAAGGAAGCCCCCAAAACGTGATTTTATTTGTGGGTAGGAGCTATCGTATCCACAAACAAGTGAAGTAACTGATAAGCATGCTTGGTGGGTGGCTTACTACTAGCCATTCCAAAATCTTGATACCGATAACATGAGCGAGAACAATACGGTGCGTTTTGGTATCNTAGGCTGCGCCAACATCGCAAGGAAGGTAGCTCGAGGCATTGCTCTTGCCCCCAACGCCACCATCTCCGCCATCGCGAGCCGCTCCAGAGAGAAGGCGGAGAAATTCGCCGCCGAAAACAAGTTACCGGCGAGCGTGAGGGTGTACGGTAGCTACGATGAGGTGGTGAAGGACCCAAGCGTGGACGCCGTGTACATTCCCCTCCCCACGAGTCTGCACGTGCGGTGGGCGGTTACGGCCGCGAGTAACAAGAAGCACGTGTTGGTGGAGAAGCCCGCGGCTCTTGACGTGGCACAGCTTGATCGGATCTTGGAAGCTTGCGAATCGAACGGCGTGCAGTTCATGGATGGTACCATGTGGCTGCATCACCCTAGGACTGCCCACATGGAACACTTGCTCTCTCTTTCTAATTCNGCCACTGGACTTGGACCCATTCATTTTATCCACAGCACATCAACAATGCCAACAACACCAGAATTCTTGGAGAACAACATTAGAGTAAAACCAGAGTTGGATGCCCTTGGTGCACTTGGTGACTTGGCCTGGTACTGCATTGGTGCTTCCCTGTGGGCAAAGGGCTACCAGCTGCCAACCACCATCACCGCTCTTCCCGACGTCACCAGAAACGCGGCCGGAGTCATACTGTCGGTCACNGCCTCTTTGCGATGGGACCAACCAAACCAAACAGTTGCAACCATTCACTGCTCGTTTCTTTCTCACACGACCATGGACCTGACCATGTGTGGTTCCAAGGGGACTCTGCATCTCAAGGACTTCATAATCCCATACCAGGAGACTAGTGCTTCTTTTGACTTCACATTTGGTGCAAAGTTTGTTGACCTTCACATTGGATGGAATGTGAGACCAGAGGAAGTTCATGTGGCCAACAAGCTCCCACAAGAGGCTCTGATGGTGCAAGAGTTTGCCAGGGTTGTTGCAAGTATTAGAGATTGTGGGTCTCAACCCTCTGCCAAATGGCCTGAAATTAGCAGAAAGACTCAACTGGTAGTGGATGCTGTGAACAAGTCCCTACAGCTTGGCTGCAAACCTGTTGCCTTGTAGGTAGTTATACTAAATCATTACACAACTTATGGATGTAGCCATTGAATAAATCTACAAATTTGATGCAGGAGTGAGTTTTGAATTTAAATTCCACAAATTTGATGAGTGTATTGGATGAGTTGTTTGCTGCCTGTTAATTGAAATTCTTCATCAATACGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00476	42844	44918	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000476s00022374.1	PF01408.17	GFO_IDH_MocA	7	127	8.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.782
SRR1783600	control	3.793
SRR1783602	moderate drought stress	4.953
SRR1811619	moderate drought stress	5.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.974
DRR006520	Root Summer glycyrrhizin high producing strain	6.998
DRR006521	Root Winter glycyrrhizin high producing strain	4.519
DRR006522	Root Winter glycyrrhizin high producing strain	4.336
DRR006523	Root Summer glycyrrhizin low producing strain	4.815
DRR006524	Root Summer glycyrrhizin low producing strain	4.585
DRR006525	Leaf Summer glycyrrhizin high producing strain	66.936
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.768

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.160
SRR2868004	Drought Stress (root)	6.940
SRR2967015	Control (root)	4.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.318
SRR9715740	Leaf	89.309
SRR9715741	Leaf	61.296
SRR9715739	Root	4.203
SRR9715742	Root	4.638
SRR9715743	Root	5.983

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.887
SRR8749028	MeJA induced 9h	8.285
SRR8749029	MeJA induced 9h	5.559
SRR8749030	Uninduced	3.428
SRR8749031	Uninduced	0.532
SRR8749032	Uninduced	2.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.960
SRR8400027	Control - Root	8.530