Gene detail

Gene detail information of Glyur000475s00029916

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35880.1	8.00E-37	TPX2 (targeting protein for Xklp2) protein family
NR	KEH41827.1	1.78E-160	TPX2 (targeting protein for Xklp2) family protein [Medicago truncatula]
Swissprot	tr\|Q84ZT9\|WVD2_ARATH	2.00E-26	Protein WAVE-DAMPENED 2
trEMBL	tr\|A0A072VJ58\|A0A072VJ58_MEDTR	7.00E-161	TPX2 (Targeting protein for Xklp2) family protein {ECO:0000313\|EMBL:KEH41827.1}

Sequence

Transcript Sequence

>Glyur000475s00029916.1
ATGCCTTTACACAGTGAAAACAAGTCTTTCAAATTACCCAAGTTCAAGAGCACAATGGAATCTGAAAATGGAGTTGCTATGGAAGACGAGAAACACGTTATTGGGGAAACAACAAAGGAGAACATAAATAAAGGAGATGAAAACAATGATAATGCGGAAATTGAGACCAAGAATGGAGTATCTCAACCCGCAGTAGAAGTTCCTGAAGGCCACAATTGTGCAGTTAGTACTAAAAACTCAAAACGTGCCAAGAACACTAAATCTGCCACAAAAGAATATAAACCCAATTTGAAGGCCCCAACTTCATCTCAAACAATACAGAAGTCAAACATTTCCAAGAGCCTTTCTTTCCCAGCAAAATCAGCTCGTGGTGATATTGTTATGAAGAAAAGCACTGATGGGATTCTGGTTAAGACAGAAAATAAGCATGTTGGTCATTCAGGAAGACCTGTTGATCAGATTTCAAGCCAAGCAAAAACTGAAAAANCGAATAAAGAAGATGATGATGTTCATTCCACTACTTCAAGTACTACTTCTCGTAGGAGGAGCAATGGTTCACGATTTTCCTTCAGATTGGAAGAACGAGCTGAAAAGAGGAAGGAGTTCTTCTCAAAGTTAGAAGAGAAAATTCAGGAAAAGGAAGCAGAGAAAAGTAACATGCAAGAGAAATCAAAGGAAAACCAAGAGGCAGAGATCAAGCAATTGAGAAAGAGGATGACATTTAAAGCCACTCCAATGCCAAGTTTCTACAAGGAACCTCCTCCAAAAGTTGAACTGAAAAAGATACCTACAACACGCCCAAAATCTCCAAAGCTTGGAAGGAACAAAGGATCTGCTGTGCCTGTGAACAACAATTCAGAAGATAAATCTTGTTCTAGCCCACATGGGAGGCAACAGCACAAGAATGATTCAGCCAAGGCAAAGGCAAAGGGTAATAAAGATGTGGTTTCAAAGAAACCAATCAGAAAAAGCCAAGCCAAGCAACAGTCTCAGGAAGTTGCAATCACGAAAACCGAAAAGGATTCTGTCAGGTCTGTAACTACTACAANTACTGAAGCTGTCTCAGGAATCAACCAAGATGCAAAAGCAGGTATAGGGAGCTATGAAGAAGAATGCCAAGATCCACCGGTTGTTGATATTTCTGAATACCAAAATGATCTTGCTCAGAGTGGTGCTGCACTGGTCTTGAATACATCCACACCTGAGATTGTATCCTATGAGGTTGCTGTTGGAGTGTAGAGATTTGTAAAGCTGGAAAGTATTTACCTAAAACTCAGGATTCCATATTGAATTTAATTACTATGCATCGTCAGTGTAAAAACGTTTTACACAGACTTCCTATCATATATCACCACGTAGATTTCCGTGCAGATATTTTAGAAAGTAACGGTACAAAGTGGCACTATGCTGAAAAATNATTNGATGTCTGTGTAAAATCTTTTTATACTGTCAATGTATAGTAATTAAACTCATCCATGTTACCAATTACTTCATTATTGTTGTGAATATAGAGGTTGCTGCTTCATGTTCATCATAAACATGTATTGCAACTAATGATAGTTTGCTTCCTATATTGAACTGTTGTTGCCTTTTGTAATGAATAGTAAGAGTATTCATGATTTAACAAGCTGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00475	108791	114179	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000475s00029916.1	PF06886.6	TPX2	190	246	3.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.596
SRR1783600	control	62.909
SRR1783602	moderate drought stress	57.161
SRR1811619	moderate drought stress	54.961

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.854
DRR006520	Root Summer glycyrrhizin high producing strain	45.754
DRR006521	Root Winter glycyrrhizin high producing strain	22.869
DRR006522	Root Winter glycyrrhizin high producing strain	22.339
DRR006523	Root Summer glycyrrhizin low producing strain	51.309
DRR006524	Root Summer glycyrrhizin low producing strain	51.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.229
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.567
SRR2868004	Drought Stress (root)	31.851
SRR2967015	Control (root)	31.999

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.968
SRR9715740	Leaf	18.029
SRR9715741	Leaf	14.272
SRR9715739	Root	3.469
SRR9715742	Root	13.819
SRR9715743	Root	13.017

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.520
SRR8749028	MeJA induced 9h	25.996
SRR8749029	MeJA induced 9h	17.967
SRR8749030	Uninduced	9.537
SRR8749031	Uninduced	2.998
SRR8749032	Uninduced	3.652

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.795
SRR8400027	Control - Root	57.886