Gene detail

Gene detail information of Glyur000475s00029911.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10660.1	0	calmodulin-domain protein kinase cdpk isoform 2
NR	XP_006588885.1	0	PREDICTED: calcium-dependent protein kinase 1-like [Glycine max]
COG	YP_004904868.1	2.00E-26	putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprot	tr\|Q38870\|CDPK2_ARATH	0	Calcium-dependent protein kinase 2
trEMBL	tr\|K7LI39\|K7LI39_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G10501.1}

Sequence

Transcript Sequence

>Glyur000475s00029911.1
ATGGGAAACAACTGTGTTGGATCGAGAGCCTCTTCTTCCAATAAGGATGGATCGTTTCCCTCTACTTCTTCTTCTTCAAGTTTCTGGTGGTCATGTGCAACAAAGAAAGAGTCTTCTCATGAACGCAAGAGTAAAAAATCAAAGGCCAATTCAGAAAGAAGTATTTCTGTTCAAGACAAACCTCCACAGGTGGTGAAAATCGACAAGGAGGATAATAATAACGCGAAGCCAACCCAACCCAAACAGGCTACTACTACTACTACAANGCCTGCAGGGGAGCCTGCAAAACCAAAGAGACCGCACAATGTGAAGAGGAATGCAAGTGCAGGGCTCAAAGCGGATTTGATTCTGCAGAGGAAAACCGGTAACCTCAAGGAGTTTTATAGCCTTGGACCAAAGCTCGGGCAGGGGCAATTCGGGACAACTTTCCTTTGCATTGAGAAAGCTAGTGGGAAAGAGTATGCTTGCAAGTCCATCTTGAAGAGGAAGCTGGTGACTGATGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCTGGGAGTGCCAATGTGATCTCCATTAGGGAGGCTTATGAGGATGCTGTTGCTGTCCATGTTGTCATGGAGCTGTGTGCTGGGGGTGAACTGTTTGATAGGATTGTGGAAAGAGGGCATTACACTGAGAGAAAGGCAGCTAGGCTTGCAAGGACTATTGTGGGCGTTATCGAGTCATGCCACTCCCTTGGAGTAATGCATCGCGATCTTAAGCCTGAGAATTTCCTTTTCGTCAATGAGCAGGAAGATTCACCCCTTAAGGCTATTGATTTTGGACTGTCTTCCTTTTTCAAACCAGGTGACATTTTTGATGATGTGGTAGGAAGTCCTTATTATGTTGCACCTGAAGTTCTACGAAAGCGTTATGGCCCAGAAGCAGATGTGTGGAGTGCTGGTGTCATCTTATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCCATTTTGCATAGTGANCTTGATTTCTCATCTGATCCCTGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTCAGAGATCCCAGAAAACGGTTAACAGCTTATGATGTTGATGGAGCAGCCCCAGACAAGCCTCTTGATTCTGCGGTTTTGAGTCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTGCTGGGTTGAAAGAAGTGTTTAAGATGATAGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGACTGAAAAAATTTGGCGCTAATCTCAACGAATCAGAAATTTACGATCTAATGCAAGCTGCTGATGTTGATAATAGTGGTACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGAAAAGGAAGATCATTTAGTTGCAGCTTTCTCATACTTTGATAAGGATGGAAGTGGCTATATCACTCGAGATGAGCTTCAACAAGCATGTGAAGAATTTGGCTTAGGGGATGATGGACGAATAGACTACAATGAATTTGTGGCTATGATGCAGATAGGCAATGCAGACTTAGGTAATAGCGGTCTAAAGTGTAGCACTAGCTTTAAAATTGGATTTAGGGAGGCACTACCTGTATGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00475	46323	51388	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000475s00029911.1	PF00069.20	Pkinase	129	378	7.90E-64
Glyur000475s00029911.1	PF13499.1	EF-hand_7	426	485	2.10E-12
Glyur000475s00029911.1	PF13405.1	EF-hand_6	498	523	6.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.230
SRR1783600	control	0.201
SRR1783602	moderate drought stress	0.044
SRR1811619	moderate drought stress	0.082

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.336
DRR006520	Root Summer glycyrrhizin high producing strain	0.500
DRR006521	Root Winter glycyrrhizin high producing strain	0.129
DRR006522	Root Winter glycyrrhizin high producing strain	0.111
DRR006523	Root Summer glycyrrhizin low producing strain	0.494
DRR006524	Root Summer glycyrrhizin low producing strain	0.705
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.108
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.056
SRR2868004	Drought Stress (root)	0.899
SRR2967015	Control (root)	0.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.558
SRR9715740	Leaf	0.202
SRR9715741	Leaf	0.359
SRR9715739	Root	0.158
SRR9715742	Root	0.094
SRR9715743	Root	0.151

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.397
SRR8749028	MeJA induced 9h	0.806
SRR8749029	MeJA induced 9h	0.444
SRR8749030	Uninduced	0.538
SRR8749031	Uninduced	0.480
SRR8749032	Uninduced	0.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.075
SRR8400027	Control - Root	0.353