Gene detail

Gene detail information of Glyur000473s00018950

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14790.1	9.00E-97	ARM repeat superfamily protein
NR	XP_004489299.1	0	PREDICTED: uncharacterized protein LOC101507016 isoform X1 [Cicer arietinum]
trEMBL	tr\|I1M860\|I1M860_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07480.1}

Sequence

Transcript Sequence

>Glyur000473s00018950.1
CCTGATTCCGCTGTCCATCGCATTCACATGCATAGATGCAGATGAAGATGCAAAGTCCAATGTAACCCCTTCTTTATTCTGTATTATAAAGCCTCCAATTTAGCCGGCCCCGTTTCGCAGTTCGCTCCCCTCATACGACGTCGTTTTGGGCTCCGCGACATTCGTCTCTTCTCTTCTCCTCTCTCGTCGGTTACCGAAATTAAAATTAAAATACCACATATATCACGCTTTTCTTTCTTCGTCTTCTTCACACCGAGTTGACTGAGTCTTCCTAACTCGCTCTCCGAGTCTCAGCTACTCATCACACTCTCTGCATTTTCTCCTTCGATCACACACTCACACTCTCTCTCTCACTCCCTCTCTTCATCTGACTATAGGTGACAGGGATGTCAGAGAAAGCTCTTAGGGATCTCAATACAATTCCTGGAACTGAAAGGAAGAGTGAGGGCTCCAGTAAGGCGTGTTTAACCAAGCCTTCTGTTGACAATGCTGGTGAAAATATCGAAGAATGGCAAACGAAGAAAAATTGTTCCCCCTTGGCTTCTCCACATGTTAATGGAAATCAGGCTGTGNCTGCTAATTCCGGTGTAGAAATTGGAATTGCGGAAGTAGAATACATTGAATCTGAGAACTTGAATGATTTAGAAGATGTTGATACTTGTCTCAAGACCCTCTTAGCTGGACTTGACTCAAAGGATTGGGTCCTGGTTTGTGATGCACTAAATAATGTTCGTCGTTTGTCTATATTTCACACGGAAGCAATGCTTGGTATGCTGGGGGATGTAATCACATATGTTGCCAAGTCCCTGAAAAGTCCTAGGAGTGCTGTTTGCAAGACTGCCATTATGACATCTGATGACATTTTCAGAGCATATAATGATCTTATAATAGATTCACTGGATCCTCTGCTAGTACAGCTTCTTCTCAAGTCTTCACAGGACAAACGCTTTGTGTGTGAGGCAGCAGAAAGAGCCTTGATATCAATGACTACTTGTATTTCCCCTATTTTTTTGTTACCAAAATTGCAACCATGCCTTAAGAACAAGAATCCTCGTATTCGCGCCAAGGCATCAATGTGCTTTTCTCGAAGTGTTTTACAACTGGGTGCAGAAGGCATAAAGACATATGGGATTGACCAATTGATCCAAGTAGCTGCAGCCCAGTTGAGTGATCAGCTCCCTGAGTCCAGGGAAGCAGCTCGAACTCTACTTCTTGAGCTTCAAAATGTGTATGAGAAATTTCACGATCTCATGCCAGCTACTGTCTCTGAGCATCCAGAGTCAGAGATGGGATCCTGGGAAAACTTCTGTCAGTCAAAACTTTCTCCTTTAAGTGCTCAAGCTGTACTCCGTGTGACCAGTATCGAGTATCGCTTGGGAGGGTCTTGTTTCATGACACATGCATGAACTTCAGTTAGTGTACTCTCCATGATTTCCTGGTTTGCCTGTCACCATTTCCTCTGTAAATACAGTGCGAAAATTGAGATGAATTCGAGTTGCCGTCAAAGCACGTATTGAGCCAAAGATTTATGATGTATTATTTTTCTTAGCTGTGGGTTACCTATATTACCTTTGATTGATATTTGAGATATATAAATTACATTACTTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00473	137075	140385	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000473s00018950.1	PF12348.3	CLASP_N	124	282	4.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.215
SRR1783600	control	34.278
SRR1783602	moderate drought stress	17.549
SRR1811619	moderate drought stress	17.674

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.513
DRR006520	Root Summer glycyrrhizin high producing strain	24.305
DRR006521	Root Winter glycyrrhizin high producing strain	10.259
DRR006522	Root Winter glycyrrhizin high producing strain	9.951
DRR006523	Root Summer glycyrrhizin low producing strain	15.671
DRR006524	Root Summer glycyrrhizin low producing strain	15.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.863
SRR2868004	Drought Stress (root)	41.565
SRR2967015	Control (root)	36.201

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.895
SRR9715740	Leaf	12.342
SRR9715741	Leaf	16.973
SRR9715739	Root	25.918
SRR9715742	Root	32.740
SRR9715743	Root	28.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.388
SRR8749028	MeJA induced 9h	15.289
SRR8749029	MeJA induced 9h	10.149
SRR8749030	Uninduced	6.004
SRR8749031	Uninduced	2.819
SRR8749032	Uninduced	2.245

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.600
SRR8400027	Control - Root	50.070