Gene detail

Gene detail information of Glyur000473s00018947

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01470.1	3.00E-68	homeobox 1
NR	XP_004489298.1	1.07E-158	PREDICTED: homeobox-leucine zipper protein HAT5-like [Cicer arietinum]
Swissprot	tr\|Q02283\|HAT5_ARATH	7.00E-95	Homeobox-leucine zipper protein HAT5
trEMBL	tr\|A0A072U6Z4\|A0A072U6Z4_MEDTR	6.00E-159	Homeobox associated leucine zipper protein {ECO:0000313\|EMBL:KEH24863.1}

Sequence

Transcript Sequence

>Glyur000473s00018947.1
CCATTTGGTTCGACTCGGATTAAACCAATGTTCTGTGCCAAGAAAAAACATTACACCAGAAAATTAACCCAATGAAGGGCAATGATGTAATTTTGATATGAAGGCACCACTATAAAAGCCCGTGGCCATTGNTCGGACAACTTTACCCGCAGAAGCCACCCACTAACTAACAGACACTCAGAGTTGCTGACACAACACACAACTCTNGCCGGAAAATCCAGCTCCGGCGACCGGAGTTCCCCTGATTCCGGCGAACCCCGAAACCTCTCCCTGCACGAAACTGACGCCCGTAGAAGACCACCGGAACCGGTGGGTGTGATCGTACGGTGCATGATGGGATCTTGCATATGCCCGTTAGAAACTCCGGCGAGGTTGCTTTGGACTACGAGCTTCTTCCGTCATAAGCTAATGATCTTCTAATCCATAACCCCCCCCCCCACCAACAAAAAAAACAAAACAACAATAAGAACAAAATAAAGAAGGAGAAGATAGAAACTAGAAACAACAGTTTCTTCTAATTCTGAAGTTAATAGTAACAGAGAAAAAAAAAAGCACACAACACACCATTTTGAGTATTAATCTCTCTTCATCAAGTTTGAGAGAGAGAGTGGTGAAGATGGAGTCTGGACGTCTTTACTTTGACAACTCTGCTTGTCGTGTGAACAACAACAACAACATGAGCATGCTTTTCCTTGGGAATGCTGATCTTGGTTTTCGAGGAGGAAGATCAATGATGAGCATGGAGGAAGGCTCAAAGAGGCGACCTTTCTTCAGCTCACCGGATGAACTGTTCGACGAGGAGTACTACGAGGAGCAGTTGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGTTTTGAGGATGAGAACAAACTGGAGCCAGAGAGGAAGACCCAATTGGCCAAGAAGCTAGGGTTGCAGCCAAGGCAAGTTGCTGTGTGGTTTCAGAACCGCAGGGCTAGATGGAAGACCAAGCAACTTGAGAGGGATTATGATGTTCTCAAGTCCTCCTATGATTCCCTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTGAAGCTAAAGAGATGCCTGGAGGAGAACCATCATCATCAGACAAGAAAGCAGCTGATCCACTTCCAGTGGACATAGCACAAATATTCAACATGAAGGTGGAGGACCACATGAGTTCTGGGAGTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCCCATCCTGTTGTTGTTGACAGTGTTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGTGGTGGATGNGTGGCCCCGGTCGAGAGGGTGGTTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTGGAGGTGTTTGCGTCATCTGAAACTGAGCACCAAAACCATGAGGAGGGTGGAGAGGCATTGAATTGGTGGGGTAACATGTACTATGTTGCATAAATCATAATGCAATAGTGCTTTTGATATTTAGTTTCTTAAGAAGAAAAGTAAGGATATTGTTGTATAATTAGATGTACCTTGTGGGCGAGAAAGAAAAAGTTAACGTCCAGTAATGGTTGCCTTGGACACCCAGGAGATGGAGTGTGTCACTAAACCAAGTTTAATAAATAAAAGTCCAGTAATTTGGTCAATGCAGTCCTGTGTTGTACTTCAAAAATTTACAATAAATTTTTTTCTTGTTTAAGAAAAANCCATAGTTGTGCGTCTGTGTGTGTCTTAAGTTCTCCCGTTAATTCCTTTTTTCCATTTCAAATTTCAAGTAGATTATTACCATCGTTTTCACACCGAAGTAATTGAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00473	113091	116964	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000473s00018947.1	PF00046.24	Homeobox	71	124	4.30E-18
Glyur000473s00018947.1	PF02183.13	HALZ	126	169	3.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.181
SRR1783600	control	29.270
SRR1783602	moderate drought stress	22.287
SRR1811619	moderate drought stress	22.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.323
DRR006520	Root Summer glycyrrhizin high producing strain	67.122
DRR006521	Root Winter glycyrrhizin high producing strain	7.128
DRR006522	Root Winter glycyrrhizin high producing strain	7.046
DRR006523	Root Summer glycyrrhizin low producing strain	65.443
DRR006524	Root Summer glycyrrhizin low producing strain	65.791
DRR006525	Leaf Summer glycyrrhizin high producing strain	142.560
DRR006526	Leaf Summer glycyrrhizin high producing strain	141.842

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	294.041
SRR2868004	Drought Stress (root)	393.526
SRR2967015	Control (root)	348.154

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	165.424
SRR9715740	Leaf	127.826
SRR9715741	Leaf	165.370
SRR9715739	Root	12.818
SRR9715742	Root	51.617
SRR9715743	Root	42.426

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.483
SRR8749028	MeJA induced 9h	171.270
SRR8749029	MeJA induced 9h	70.941
SRR8749030	Uninduced	25.114
SRR8749031	Uninduced	8.277
SRR8749032	Uninduced	16.194

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	163.032
SRR8400027	Control - Root	167.911