Gene detail

Gene detail information of Glyur000473s00018945

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62850.1	3.00E-69	Nodulin MtN3 family protein
NR	XP_003553885.1	4.83E-154	PREDICTED: bidirectional sugar transporter SWEET6b-like [Glycine max]
Swissprot	tr\|Q8W0K2\|SWT6B_ORYSJ	5.00E-94	Bidirectional sugar transporter SWEET6b
trEMBL	tr\|I1N5T4\|I1N5T4_SOYBN	2.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G01280.1}

Sequence

Transcript Sequence

>Glyur000473s00018945.1
CCTTTTACTACTCTTAGCAATAGCATAAACACCGCACTCTGATGAGAATATGGCCAACGTTCTTTCCAGGATCAGAAGCTTAACTCTTTCTCCACTGCTTTAAATTTAATTATTTCACTTTCATTGTTTGTGTCAATCTATCAACAAGCTCTTTCAAAGATTGTTCAATCCGCATATAAATCTAGCATAGCGTGACTACTCAAGCCGACCAAAGGTTACGGAGAAAGCCATTCTCTCTCCCTTTTTCTGTGAATTTTTTTTTGCAACAATTGTCTCTGCAGAAGAACAAGAACAAGAGCTTCTGAAATGGGAACTGCTGCAATAGCTCGTAACGTCGTTGGCATCATAGGCAATGTCATCTCTTTCGGCCTGTTTTTCTCACCGGCTCCAACTTTCTATGGAATCATAAAGAAGAAAACGGTGGAAGAGTTCAAGCCCGACCCTTATTTAGCAACATTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTGGTACTCACCATCAATGCTGTTGGTCTTGCCTTCGAGTTCATCTATCTTACCATATTTTACATCTATGCCACCAACAAAGGACGAAAAAAGGTACTGCTTTTTCTTCTCATCGAGATTATTTTCTTTGCTGCCGTTGTTCTTGTAACAATGCTGGCACTTCATGGCACTTACAAAAGGTCCTTAGTGGTTGGTGTTCTATGTGATATCTTCAATGTGATGATGTATGTCTCTCCTCTTACAATCATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTAACTAACTTCCTTAATGGTGTGTGCTGGACAACATATGCTCTCATCCACCCCTTTGACATTTATGTCTTTATCAGCAATGGTATTGGAGCATTTTCTGGACTTGTTCAGCTCATACTATATGCTTGCTATAGCTCTTGCAAGGGTAAAAATGATGATGATGATGGTGATCATGAATTAAAGCCAACTGGGGTTCAACTCTCTACCTCAAATGGAAGAGTTGCAGTGTGATGACACACCTAACATCAAAGTCATCAAATCCTTTCTTAATTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00473	74806	82110	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000473s00018945.1	PF03083.11	MtN3_slv	10	97	1.00E-21
Glyur000473s00018945.1	PF03083.11	MtN3_slv	133	218	1.50E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.686
SRR1783600	control	1.656
SRR1783602	moderate drought stress	0.590
SRR1811619	moderate drought stress	0.560

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.062
DRR006520	Root Summer glycyrrhizin high producing strain	3.178
DRR006521	Root Winter glycyrrhizin high producing strain	25.952
DRR006522	Root Winter glycyrrhizin high producing strain	27.056
DRR006523	Root Summer glycyrrhizin low producing strain	1.714
DRR006524	Root Summer glycyrrhizin low producing strain	1.719
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.101
SRR2868004	Drought Stress (root)	0.836
SRR2967015	Control (root)	0.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.061
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.060
SRR9715739	Root	1.902
SRR9715742	Root	7.278
SRR9715743	Root	4.760

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.639
SRR8749028	MeJA induced 9h	0.215
SRR8749029	MeJA induced 9h	0.167
SRR8749030	Uninduced	2.582
SRR8749031	Uninduced	1.639
SRR8749032	Uninduced	3.198

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.795
SRR8400027	Control - Root	2.584