Gene detail information of Glyur000473s00018943 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01480.1 | 0 | cyclophilin 38 |
| NR | XP_004489294.1 | 0 | PREDICTED: peptidyl-prolyl cis-trans isomerase, chloroplastic-like [Cicer arietinum] |
| COG | YP_001656323.1 | 2.00E-101 | peptidyl-prolyl cis-trans isomerase [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q9SSA5|CYP38_ARATH | 0 | Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic (Precursor) |
| trEMBL | tr|A0A072U566|A0A072U566_MEDTR | 0 | Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:KEH24854.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00473 | 66289 | 71333 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000473s00018943.1 | PF00160.16 | Pro_isomerase | 281 | 437 | 6.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.887 |
| SRR1783600 | control | 3.996 |
| SRR1783602 | moderate drought stress | 3.725 |
| SRR1811619 | moderate drought stress | 3.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.890 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.929 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.069 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.897 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.283 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.150 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 72.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 72.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.786 |
| SRR2868004 | Drought Stress (root) | 5.540 |
| SRR2967015 | Control (root) | 5.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.869 |
| SRR9715740 | Leaf | 60.095 |
| SRR9715741 | Leaf | 46.753 |
| SRR9715739 | Root | 0.127 |
| SRR9715742 | Root | 2.603 |
| SRR9715743 | Root | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.299 |
| SRR8749028 | MeJA induced 9h | 4.476 |
| SRR8749029 | MeJA induced 9h | 1.508 |
| SRR8749030 | Uninduced | 1.689 |
| SRR8749031 | Uninduced | 1.210 |
| SRR8749032 | Uninduced | 1.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.925 |
| SRR8400027 | Control - Root | 5.550 |