Gene detail

Gene detail information of Glyur000472s00019581.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02640.1	0	beta-xylosidase 2
NR	XP_003519750.1	0	PREDICTED: probable beta-D-xylosidase 2-like [Glycine max]
COG	YP_004464029.1	1.00E-143	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q94KD8\|BXL2_ARATH	0	Probable beta-D-xylosidase 2 (Precursor)
trEMBL	tr\|I1JBG9\|I1JBG9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G01660.1}

Sequence

Transcript Sequence

>Glyur000472s00019581.1
CTAAACTCTNTAAAGCCTGAGGTTACATTCATATTCATTTTATCATTTCTTTCACAAAATGGGTTCCATCTTCTCACCCCTCATCACCACCACCATAGTCTTCCTGCTCCTCTTTGTGGGTGGTGGCGAGGCACGTGACCCTTTAGCGTGTGACCCGAAGGACACCGCCACAAAGAACTTGCCATTTTGCAAGGCATCACTGCCCATAGCAGCGAGGGTGAAGGACCTCATTGGAAGGTTGACACTGCAAGAAAAGGTTAACCTGCTAGTGAACAATGCCGCGGCGGTTCCGCGGCTTGGAATAAAAGGGTATGAGTGGTGGTCTGAGGCACTACATGGGGTTTCAAATGTGGGACCCGGAACCAAGTTTGGTGGCCAATTCCCAGCTGCCACTAGCTTCCCTCAAGTCATCACTACCGCTGCTTCATTCAATTCATCCTTGTGGGAAGCAATCGGACGGGTTGTCTCGGACGAAGCAAGGGCAATGTACAATGGAGGAATGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATTTTTAGAGACCCACGGTGGGGCCGTGGACAGGAGACTCCCGGTGANGACCCAATGCTGGCCGGTAAATATGCGGCCAGTTATGTGAGGGGACTACAGGGAACGGACGGTAACCGGTTGAAAGTGGCTGCATCTTGTAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTCAATGCTAAGGTTAGCAAGCAGGACATNGAGGACACGTTCAATGTGCCATTTAGGATGTGCGTGAAGGAAGGGAAAGTGGCAAGTGTGATGTGTTCTTACAATCAGGTCAATGGTGTCCCTACCTGTGCCGACCCCAATCTCCTAAAGAGAACAGTTCGTGGCCAATGGCGTCTTGATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTATTTTACACCAGCCAACATTACACATCAACGCCAGAAGAAGCTGCCGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTCCTAGGATTGCATACGCAGAATGCCGTGAAGAAAGGCCTGTTAAGCGAAGCAGATGTGAATGGTGCTTTAGCGAACACATTCACAGTCCAAATGAGGTTAGGGATGTTTGATGGTGAGCCATCAGCCCAGGCATATGGCAACCTTGGTCCAAGAGATGTGTGCANCCCAACTCACCAAGAGCTCGCACTTGAAGCTGCCACACAAGGGATTGTGCTTCTTAAAAACAATGGCCCTTCTTTGCCTCTCTCCNCGCGGCGNCACCGCACCGTGGCTGTCATTGGGCCCAATTCCAATGCCACCGTCACCATGATCGGCAACTATGCTGGGATCGCTTGTGGATACACAAGCCCTTTACAAGGAGTGGGGAGATACGCCAAGACTATTCACGAGCTCGGTTGTGCAAACGTGGCGTGCACNGATGACAAGCAATTTGGTTCGGCTATAAATGCAGCCCGTCAAGCAGATGCAACAGTTCTAGTTATGGGACTGGACCAGTCAATCGAGGCAGAAACCATGGACAGGGCTGGCTTGCTTCTTCCTGGGCGTCAACAAAACCTTGTGTCAAAGGTAGCAGCTGCCTCGAGAGGCCCAACCATTTTGGTCCTAATGTCTGGTGGGCCTGTGGATGTAACTTTTGCAAAGAATGATCCTCGAATCGTAGGTATACTGTGGGCTGGTTATCCTGGTCAAGCCGGTGGTGCTGCCATTGCAGATATCTTGTTTGGAATTGCTAACCCTGGAGCAAAGCTACCTATGACATGGTACCCACAAGGGTACCTTGAAAACTTACCAATGACAAATATGGCAATGCGATCAAGCCAATCCACAAGGTACCCTGGGAGAACCTATCGATTTTACAATGGCCCAGTGGTGTATCCNTTTGGTTATGGATTGTCTTACACCCACTTTGTTCACACATTAGCTAGTGCCCCCAAACTGGTGTCGGTTCCCATTGATGGGCACCGCCGTGGCAACAGCTCAAACATTTCAAACAAGGCNATTAGGGTGACACATGCGCGATGTGGCAAGCTCTCCATTAGCCTCCACATCGATGTTAAAAATGTTGGCTCCAAAGATGGCACTCACACTCTACTGGTGTTCTCGACTCCACCTGAGGGGAATGGTCATTGGGCACCGCACAAGCAACTAGTGGCCTTTGAGAAAGTCCATGTTCCTGCTAAGGCCCATCAGCGAGTACGGGTCAATATTCATGTCTGCAAACTCCTAAGTGTGGTTGATAGGTCAGGGGCTAGGAGAATTCCNATGGGAGAACACAACCTTCACATTGGCGATGTTAAACACTTCGTGTCACTTCAAGCAGAGACACTTGGGATCATCAAGTCCTGATTTTTTGGGGTGATATCAACAATATTTCTATCTCTACTAAGGTTAGTGTATAATAGAATATAGTGTGTNAGTGATATCTGGAGTTTTACCCTTCAATTGTGTGCATGGGGTTTTGGTTATAAGGAACCACTTCAAACAGCAAAAAGATATGTTATGGCTTACGAGACAGTAGATTTTAGATCGATTCGTCAATGACACTCAAATAAAGCAATAGGGTTAATTGGGTGCAATTTTTGGAGAGGAGATAAAGGAAATGTACTATTCTCTTTCTTCTGTTTTTGTCTACTTTGTTCACCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00472	71183	76057	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000472s00019581.1	PF00933.16	Glyco_hydro_3	64	349	6.20E-60
Glyur000472s00019581.1	PF01915.17	Glyco_hydro_3_C	395	626	4.10E-53
Glyur000472s00019581.1	PF14310.1	Fn3-like	689	756	6.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.676
SRR1783600	control	3.734
SRR1783602	moderate drought stress	2.049
SRR1811619	moderate drought stress	1.981

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.006
DRR006520	Root Summer glycyrrhizin high producing strain	20.667
DRR006521	Root Winter glycyrrhizin high producing strain	0.041
DRR006522	Root Winter glycyrrhizin high producing strain	0.041
DRR006523	Root Summer glycyrrhizin low producing strain	5.438
DRR006524	Root Summer glycyrrhizin low producing strain	5.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.788
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.733

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.602
SRR2868004	Drought Stress (root)	15.257
SRR2967015	Control (root)	16.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.202
SRR9715740	Leaf	0.348
SRR9715741	Leaf	0.718
SRR9715739	Root	4.032
SRR9715742	Root	10.691
SRR9715743	Root	10.318

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.566
SRR8749028	MeJA induced 9h	0.133
SRR8749029	MeJA induced 9h	0.562
SRR8749030	Uninduced	0.444
SRR8749031	Uninduced	0.310
SRR8749032	Uninduced	0.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.695
SRR8400027	Control - Root	24.680