Gene detail information of Glyur000472s00019578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62550.1 | 5.00E-46 | Adenine nucleotide alpha hydrolases-like superfamily protein |
| NR | XP_004495908.1 | 6.89E-92 | PREDICTED: universal stress protein A-like protein-like isoform X1 [Cicer arietinum] |
| COG | YP_001104669.1 | 7.00E-13 | UspA domain-containing protein [Saccharopolyspora erythraea NRRL 2338] |
| Swissprot | tr|Q8LGG8|USPAL_ARATH | 9.00E-16 | Universal stress protein A-like protein |
| trEMBL | tr|C6SZS5|C6SZS5_SOYBN | 4.00E-92 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G01690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00472 | 59522 | 61915 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000472s00019578.1 | PF00582.21 | Usp | 6 | 156 | 3.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.648 |
| SRR1783600 | control | 3.638 |
| SRR1783602 | moderate drought stress | 12.066 |
| SRR1811619 | moderate drought stress | 11.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.003 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 318.446 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 309.446 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.437 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.106 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 93.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 92.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.259 |
| SRR2868004 | Drought Stress (root) | 11.474 |
| SRR2967015 | Control (root) | 10.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.351 |
| SRR9715740 | Leaf | 64.736 |
| SRR9715741 | Leaf | 84.393 |
| SRR9715739 | Root | 0.764 |
| SRR9715742 | Root | 3.841 |
| SRR9715743 | Root | 2.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 213.435 |
| SRR8749028 | MeJA induced 9h | 356.583 |
| SRR8749029 | MeJA induced 9h | 498.679 |
| SRR8749030 | Uninduced | 287.620 |
| SRR8749031 | Uninduced | 221.057 |
| SRR8749032 | Uninduced | 577.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.486 |
| SRR8400027 | Control - Root | 28.127 |