Gene detail

Gene detail information of Glyur000472s00019572

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02030.1	Vps51/Vps67 family (components of vesicular transport) protein
NR	XP_003591407.1	Fat-free-like protein [Medicago truncatula]
trEMBL	tr\|G7IDQ8\|G7IDQ8_MEDTR	Transport complex protein {ECO:0000313\|EMBL:AES61658.1}

Sequence

Transcript Sequence

>Glyur000472s00019572.1
CGGCCAGACGGNCCCGTTTTCACAACAGGAACCGCAAGCGAGCAGCAAGAATCCGGTGGAGCCGTGGCTATTCCCTTCCTCCAAATCTCATAGACTGATTTGATTTGATTTGATTTCATAGATCGGAGGAAGAGGACGGTGACTTGGTTTGGTACAGCAGAACCAGAGAGGAAGGAAAAAGAGAAGAGAAATGGGGGCAGATGAAGTAGCACTGGACGACAAAGCAAAGAGGATGAGAGATCTGCTATCCAGTTTCTACTCTCCAGACCCTTCCTCCAACTCCGGCAACACCTCCTCCAAATACGCCTCTCTCGACGACATTAACTCCAACTCCTTCGATCCCGATCAGTACATGANTATCCTGGTACATAAGTCCAATTTGGAAGGGCTACTCCAGCGGCATGTTGAAATGGCAGCTGAAATTAAGAATCTCGACACTGACTTGCAAATGCTAGTCTACGAGAATTACAACAAGTTCATCAGCGCTACCGATACTATAAAGAGGATGAAAGGTAACATTTCAGGGATGGAGACGAATATGGAACAGCTTCTTGATAAGATAATGTCTGTGCAGTCAAGGAGTGACAGTGTGAACACTTCTCTATTCGACAAAAGGGAGCATATTGAGAAACTGCATCGGACCTGCAATCTTCTTCGGAAAGTTCAGTTTATATATGATCTGCCTGATAGACTTGGCAAGTGCATCAAATCAGAGGCGTATGCAGATGCAGTCAGGTTTTACACTGGAGCAATGCCAATTTTTAAGGCATACGGAGATTCATCATTCCAGGATTGTAAGCAAGCATCTGAAGAAGCAATAGCTATCATAGTNAAAAACTTGCAGGGGAAGCTATTTTCGGATTCTGAATCAATACAAGTGAGAGCCGAGGCTGCAGTGCTCCTTAAGCAGTTGGATTTTCCGGTGAACAATTTGAAGGCAAAGTTACTTGAGAAGTTGGAACAATCTATTACAGACATTCAGCTGAGCCCTGAAGAAATAAACAATGCTTCAGGGGACCTTTCTCCTTCAGCATCTGCCCATGAGGCAGCAATTCATGAATTTGTGGAGGCAGTTCGTGCTTTTCGAGTAATATTTCCTGATTCAGAAATGCAGTTGGTTAAACTTGCTCAGGACTTGGTCACTAAGAACTTTGTAATTACTGAGGAATATGTGAAGACACGGATTGGNCCAGCAGATCTACTTGCTGTTCTTCGAGTTATCTGGAATGATGTTCTCCAGATAGATGAAGTCTTACCGGAAGCAGCTCTCTCTAACCATTCTCTTGAGGCTGCAAAGGTTGTTGTCCCGTTGTATGTTAGAAGTGNATTTTCTCATCTTCTGCAAGATATCTCAGATTCCTTCTCNCAAATCCAGAAAAAGGATGGAGCAGAGCAGTACTCTCTTGAAGTTGTTCTTGATGCTAGCACAAAAGCAGTTCTCCAAGGAGGCATGAATGTCTTGCTGGACTTCCGCAAAATTTTAGATGATGGCTCTGGGATCTTAGTTAGACTAAGAGACCTATTCATTGATTGGGTTCAAGAAGGATTTCAAGACTTTTTTGGGNGACTTGAAGATCAGTTCCATCTGTTTTCAGGAAGAAATAATTCTACAGCTATTCAAGTACATGGTTTTGCAGATGGAGCTCAAGGTGACAAAGCTTTTGCTGGCCTTGTCCTAGTGCTGGCACAATTGTCTGCTTTTATTGAACAAACTGAAATAGCNGCTTCCTTTTCTGGTGGTAGTGTTAGAGGCTATGAATCTGGACCTGCATTTGTTCCTGGAGAAATCTGTCGAAAGTTTCGGTCAGCTAGTGAAAAATTCCTGCACTTGTACATAAATATGAGAACCCAGAGGATTTCACTTATCTTGAAGAAGAGGTTTACAACACCCAATTGGGTTAAGCATAAGGAGCCGAGAGAAGTTCATATGTTTGTTGATTTATTTCTTCAAGAGCTTGAAGCTATAGTTAACGAAGTGAAGCAGATCTTGCCTCGAGGTATACGTAAGCACCACAGGACTGATAGTAATGGAAGTAGTGTTTCATCAAGGAGCAACCCCTTGCGGGAGGAGAAATTGGGTAGGTCAAATACTCAAAGGGCAAGGAGCCAGCTTCTGGAAACACATCTAGCAAAACTGTTTAAACAAAAAGTTGAAATTTTTACAAAAGTAGAATATACACAGGAGTCTGTTGTTACTACTATAGTGAAAATGTGCCTTAAAAGTTTACAAGAATTTGTCCGTCTCCAAACTTTTAGCCGGAGTGGATTCCAACAAATTCAACTAGATATCCAGTTCCTAAGGACCCCTTTAAGGGAAATAGTTGAAGATGAAGCTGCAGTTGACTTTTTGCTTGATGAGGTGATTGTTGCTACTGCAGAGCGGTGTCTTGATCCAATTCCATTGGAGCCTCCCATACTGGACAAACTTATACAAGCAAAGTTGGCTAAAACCAAGGAACAAAACACAATCTCTTCATAAATATTTTGTGGAACTAGAGACTATGATCATGTCAACCTTTCCTACTTGCTGATCCATACATNCATATGTTCAATGTGAGAATATAAGGAAGGGCTGAAGAGAAGGATGCCTTTGTTGTATTTGTCATCTCTCGTAGAATTAGTTATGGTTTGGCAGTTGATTGTCAACTTGGTTCCTATTCTGTTCATTTTGTAAATCTCTTGTAACATATGTCACATTGCCAGTTTGTTATTTTTGGAAGTATGGAAACACGAGAAAGTAAACATTCATTCATGACTAGAGTGCTCAGTTCAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00472	14683	23034	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006893 Golgi to plasma membrane transport

cellular_component
GO:0000145 exocyst

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000472s00019572.1	PF15469.1	Sec5	83	242	4.00E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.815
SRR1783600	control	19.900
SRR1783602	moderate drought stress	17.330
SRR1811619	moderate drought stress	17.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.403
DRR006520	Root Summer glycyrrhizin high producing strain	25.964
DRR006521	Root Winter glycyrrhizin high producing strain	33.335
DRR006522	Root Winter glycyrrhizin high producing strain	32.320
DRR006523	Root Summer glycyrrhizin low producing strain	25.013
DRR006524	Root Summer glycyrrhizin low producing strain	24.641
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.592
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.572

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.390
SRR2868004	Drought Stress (root)	43.524
SRR2967015	Control (root)	43.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.476
SRR9715740	Leaf	17.233
SRR9715741	Leaf	19.418
SRR9715739	Root	3.205
SRR9715742	Root	16.251
SRR9715743	Root	12.499

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.968
SRR8749028	MeJA induced 9h	22.152
SRR8749029	MeJA induced 9h	9.278
SRR8749030	Uninduced	13.201
SRR8749031	Uninduced	8.937
SRR8749032	Uninduced	8.878

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.208
SRR8400027	Control - Root	45.636