Gene detail information of Glyur000472s00019569 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62410.1 | 3.00E-29 | CP12 domain-containing protein 2 |
| NR | XP_004495904.1 | 5.14E-54 | PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Cicer arietinum] |
| COG | YP_005069080.1 | 1.00E-12 | hypothetical protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9LZP9|CP122_ARATH | 4.00E-36 | Calvin cycle protein CP12-2, chloroplastic (Precursor) |
| trEMBL | tr|B7FGI5|B7FGI5_MEDTR | 5.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:AFK43368.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00472 | 3851 | 4258 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000472s00019569.1 | PF02672.10 | CP12 | 65 | 135 | 2.80E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.556 |
| SRR1783600 | control | 1.883 |
| SRR1783602 | moderate drought stress | 44.155 |
| SRR1811619 | moderate drought stress | 43.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.729 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 283.494 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 281.412 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.635 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5524.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5646.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.295 |
| SRR2868004 | Drought Stress (root) | 53.932 |
| SRR2967015 | Control (root) | 62.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3511.808 |
| SRR9715740 | Leaf | 5820.925 |
| SRR9715741 | Leaf | 2640.401 |
| SRR9715739 | Root | 1.835 |
| SRR9715742 | Root | 4.621 |
| SRR9715743 | Root | 2.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.171 |
| SRR8749028 | MeJA induced 9h | 153.702 |
| SRR8749029 | MeJA induced 9h | 109.878 |
| SRR8749030 | Uninduced | 166.440 |
| SRR8749031 | Uninduced | 145.604 |
| SRR8749032 | Uninduced | 630.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.304 |
| SRR8400027 | Control - Root | 7.576 |