Gene detail information of Glyur000471s00019790 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63200.1 | 1.00E-132 | PATATIN-like protein 9 |
| NR | KEH23766.1 | 0 | patatin-like phospholipase [Medicago truncatula] |
| COG | YP_006866470.1 | 4.00E-29 | patatin-like phospholipase [Psychroflexus torquis ATCC 700755] |
| Swissprot | tr|Q93ZQ3|PLP9_ARATH | 0 | Probable inactive patatin-like protein 9 |
| trEMBL | tr|A0A072U326|A0A072U326_MEDTR | 0 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00471 | 147231 | 148791 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000471s00019790.1 | PF01734.17 | Patatin | 31 | 234 | 1.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.498 |
| SRR1783600 | control | 1.476 |
| SRR1783602 | moderate drought stress | 0.948 |
| SRR1811619 | moderate drought stress | 0.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.678 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.562 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.078 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.765 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.672 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.545 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.801 |
| SRR2868004 | Drought Stress (root) | 3.858 |
| SRR2967015 | Control (root) | 5.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.610 |
| SRR9715740 | Leaf | 0.093 |
| SRR9715741 | Leaf | 0.224 |
| SRR9715739 | Root | 7.099 |
| SRR9715742 | Root | 5.571 |
| SRR9715743 | Root | 6.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.885 |
| SRR8749028 | MeJA induced 9h | 0.049 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.918 |
| SRR8400027 | Control - Root | 7.788 |