Gene detail

Gene detail information of Glyur000471s00019788.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02780.1	0	Terpenoid cyclases/Protein prenyltransferases superfamily protein
NR	XP_006577694.1	0	PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max]
COG	NP_217894.1	5.00E-21	Halimadienyl diphosphate synthase [Mycobacterium tuberculosis H37Rv]
Swissprot	tr\|O04408\|KSA_PEA	0	Ent-copalyl diphosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|K7KF93\|K7KF93_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G31080.2}

Sequence

Transcript Sequence

>Glyur000471s00019788.1
ATGTTGGGCTGCATGGAAGATGGAGAGATAAGCATATCAGCTTACGACACAGCTTGGGTTGCACTCGTGAGAAATGTTGATGATGAAAATGCACCTCAATTCCCGTCCTCTCTTGAATGGATCGCCAATAATCAGCTTCCAGATGGTTCCTGGGGGGACAGTGAATTATTCGTGGCCCATGACCGCATTCTTAACACCTTAGCTTGTGTTATTGCATTGAGATCATGGAATATGCACCCTGACAAGTGTGAAAAGGGAATGNCATTTTTTATGGAAAATCTACACAAGCTTCAGGATGAGAATGCTGAGCATATGCCAATCGGGTTTGAAGTTGCTTTCCCTTCTCTTCTCAATATAGCTCGGAGTTTGAACATTGAAGTGCCAGAGGATTCTCCTATCTTGAAAGANATCTTTGCAATGAGAGACCTCAAGCTCAAAAAAATACCGAGAGAGCTGATGCACAAGGTGCCCACAACACTGCTCCATAGTTTGGAGGGAATGCCAAATTTGGAGTGGAAACAACTTCTTAAGCTGCAGTCCCAAGACGGATCAAAATGCCCTCAACTACCTCGACAAAATGTTCCAAATGTGTACCCGGTGGATTTGTTTGAACACATATGGGTTGTGGATCGGCTAGAACGCCTTGGAATTTCGAGATATTTTCAGCAAGAGATCAAGGACTCTATTAATTATGTTTCAAGATATTGGACTGAGAAGGGTATTTGCTGGGCAAGGAATTCAGAGGTTCAAGATATAGACGACACAGCAATGGGGTTTAGACTATTAAGGTTGCATGGCCACCAAGTTTCACCCAATGTGTTCAAGCATTTTGAGAAAAGTGGGGAGTTCTTCTGCTTTGCTGGGCAGACAACACAAGCCGTGACAGGCATGTTTAATCTCTATAGAGCTTCTCAAGTGCTGTTTCAAGGAGAGAAGATTCTAGAGGATGCCAAGCACTTCTCAGCCAAATTTCTAACTGAGAAACGTGCTGCTAATGAGCTCCTTGATAAATGGATCATAACCAAAGATTTACCTGGCGAGGTGGGTTACGCGCTGGACGTGCCCTGGTATGCGAGCTTACCCCGATTGGAAGCAAGGTTTTACATTGAACAATATGGTGGTGAAAGTGATGTTTGGATTGGCAAGACCCTTTACAGGATGCCCTACGTGAATAATGATGTTTATCTGGAGCTTGCAAAATTGGATTACAACAAATGTCAAGCAGTGCATTACAAAGAATGGGAAAAACTCCAAAGGTGGCACTTGGAATCAGAATTGGAGGGGTTTGGATTGAGCAAGAAAAGTCTCCTGTTTGCTTATTTTGTAGCAGCAGCCAACATATTTGAGCCTGAGAGGTCTCTAGAGAGGCTTGCATGGGCTAAAACAACAGCTTTGGTAGAGACACTGGTGTCACATATAAAAGATGAAGAAACTAGGAGTGCATTTGTAGATCGGTTCATTAACAGCATCAATGGACAAGACTACTGCTCAAACAAGCAGTTGAACAAGAGGGAGGAGAAACTCCTGGGAATTTTGCTGACAACCCTTGATCACCTTGGATTCGAAATGTTTCAGAGTCATGGTCAGGAGAATTCCAATTATCTGAATCAAATATGGCAAAGCTGGCTGTCAAGTTGGCAGAATGAAGGAAACAGATCCCAAAGTGAAGCTGAGCTACTTGTGCAAATCATAAATTTAACTGCTGGCTATTGGTCAGAAGAACTACAGCTCAATCCCCAGTACCAGAGATTGCTGGAAGTCACTAATAGAGTCTGCTTTGGCCTCAGTAATTACCAAAGCAACAAGGCACATGGAGGCAACCTGTTTACAACCAGCATCAATACCCCTCAAATAGAGTCAGAAATGCAAGAACTGGTGCAATTGGTGCTTCAAAATTCCTCAGATGGCCTCCCCTCCAACATCAAGAATTCATTCCTCATAGTGGCCAAGAGTTTCAACTATGCAGCATACCGTGACCCAGAGACCATTAACTCTCATATTGAGAAAGTTCTATTTCAGAAAGTGAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00471	134598	139050	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04120	E5.5.1.13	EC:5.5.1.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0010333 terpene synthase activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000471s00019788.1	PF01397.16	Terpene_synth	191	352	6.10E-44
Glyur000471s00019788.1	PF03936.11	Terpene_synth_C	395	634	8.70E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.018
SRR1783600	control	0.012
SRR1783602	moderate drought stress	0.211
SRR1811619	moderate drought stress	0.173

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.030
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.108
DRR006524	Root Summer glycyrrhizin low producing strain	0.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.046
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.057

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.317
SRR2868004	Drought Stress (root)	0.026
SRR2967015	Control (root)	0.198

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.046
SRR9715740	Leaf	0.061
SRR9715741	Leaf	0.026
SRR9715739	Root	0.000
SRR9715742	Root	0.084
SRR9715743	Root	0.041

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.134
SRR8749028	MeJA induced 9h	0.089
SRR8749029	MeJA induced 9h	0.108
SRR8749030	Uninduced	0.112
SRR8749031	Uninduced	0.075
SRR8749032	Uninduced	0.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.047
SRR8400027	Control - Root	0.136