Gene detail information of Glyur000471s00019787 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63170.1 | 5.00E-77 | Chalcone-flavanone isomerase family protein |
| NR | XP_004493673.1 | 7.69E-150 | PREDICTED: chalcone--flavonone isomerase-like [Cicer arietinum] |
| Swissprot | tr|Q9M1X2|FAP1_ARATH | 4.00E-103 | Fatty-acid-binding protein 1 |
| trEMBL | tr|A0A072U3N8|A0A072U3N8_MEDTR | 3.00E-147 | Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00471 | 131896 | 134379 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000471s00019787.1 | PF02431.10 | Chalcone | 85 | 271 | 1.50E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.086 |
| SRR1783600 | control | 8.244 |
| SRR1783602 | moderate drought stress | 6.543 |
| SRR1811619 | moderate drought stress | 6.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.281 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.137 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.446 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.341 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.948 |
| SRR2868004 | Drought Stress (root) | 8.416 |
| SRR2967015 | Control (root) | 8.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.720 |
| SRR9715740 | Leaf | 47.945 |
| SRR9715741 | Leaf | 25.176 |
| SRR9715739 | Root | 6.563 |
| SRR9715742 | Root | 7.163 |
| SRR9715743 | Root | 7.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.297 |
| SRR8749028 | MeJA induced 9h | 3.026 |
| SRR8749029 | MeJA induced 9h | 3.317 |
| SRR8749030 | Uninduced | 3.282 |
| SRR8749031 | Uninduced | 1.271 |
| SRR8749032 | Uninduced | 2.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.642 |
| SRR8400027 | Control - Root | 14.787 |