Gene detail

Gene detail information of Glyur000471s00019785

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02780.1	0	Terpenoid cyclases/Protein prenyltransferases superfamily protein
NR	KEH21632.1	0	copalyldiphosphate synthase [Medicago truncatula]
COG	NP_217894.1	6.00E-29	Halimadienyl diphosphate synthase [Mycobacterium tuberculosis H37Rv]
Swissprot	tr\|O04408\|KSA_PEA	0	Ent-copalyl diphosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A072TW04\|A0A072TW04_MEDTR	0	Copalyldiphosphate synthase {ECO:0000313\|EMBL:KEH21632.1}

Sequence

Transcript Sequence

>Glyur000471s00019785.1
ATGTCTTCTCACTTCTCCACCCACATCCTCCACCTTCCCTCTTCTTTCTCTAATTCTTCCAACCATAACCATTATTACTACTCCCCTTTTCCTTTTCCTTCTTCTTCTCCTATTCATCTCTTCTCCAATTCCTCTGTGGGCGTCGTGTCGTTCGAGGACAAAGACAAACAAGAGAAAAGATGCAGAGCTATATCCAAATCACGGACTCAAGACGTATTTCAGAGTAGTGTAGCAACGTTAAAGTTGCGTGAGATTAATGTGGAGGATGACATAGACGAGGAGCAAGATATTGGGAAGGTTTCGGTGACGAAGGAGATTGAGAAGCGAGTGAAGACAATCAAATTGATATTGGGGTCGTTGGAAGATGGAGAGATAACAATATCTGCTTATGACACTGCTTGGGTTGCTCTTGTTGAAGATGTTCATGGAAGTGGTTCCCCTCAATTCCCTTCGAGCCTAGAATGGATTGCGAGAAATCAACTCCCAGATGGTTCATGGGGTGATAGTGAATTGTTTTCAGCACATGATCGCATCATTAACACGTTGGCCTGTGTTATTGCATTAAGATCATGGAATATGCACCCTGATAAGTGTCACAAAGGGATGGCATTTTTTAGAGAGAACCTTGGGAAGCTTGAGAATGAGAACGAGGAGCATATGCCAATTGGGTTTGAAGTTGCTTTCCCTTCACTTCTCGACATAGCTCGTGGTTTGAACATTGAAGTACCAGATGATTCCCCTATATTGAACGATATCTTTGCCAAGAGAAATGAAAAACTCACAAGAATACCAAGAGAGGTGATGCATAAAGTGCCCACAACTCTGCTCCATAGCTTGGAAGGGATGTCAGGGTTGGACTGGAAACAGCTTCTAAAACTGCAGTCTCAAGATGGATCCTTCTTGTTTTCCCCATCTTCCACCGCCTTTGCACTCATGCAAACTAAAGATCAAAATTCCCTCAATTACTTGAATAAAGCTGTCAACAAGTTCAATGGGGGAGTTCCAAACGTGTATCCAGTGGATTTGTTTGAACATATTTGGGTGGTTGATCGACTGGAACGCCTTGGAATATCGCGGTATTTTCAGCAAGAGATCAAAGAGTGTATGAACTATGTTTACAGATATTGGACTGAGAAGGGGATTTGTTGGGCAAGAAATTCAAATGTTCAAGATATCGATGACACAGCAATGGGTTTCAGATTACTAAGATTACATGGCCACCAAGTTTCAGCCAATGTGTTTAAGCACTTTGAGAGGAATGGGGAGTTCTTCTGCTTTGCGGGGCAGTGCACACAAGCGGTGACAGGGATGTTCAATCTGTATAGGGCCACACAAGTGGTGTTCCCAGGGGAGGAGATTCTTGAGAANGCCAAGAAGTTCTCGGGCAAGTTTTTGAGGGACAAGAGAGAAGCAAATGAGCTTATAGATAAATGGATCATCATGAAGAACCTGCCTGGAGAGGTGGGTTACGCATTGGACGTGCCATGGTATGCAAACTTGCCTCGNGTGGAGACGAGATTCTACATGGATCAATACGGGGGCGAGAGTGACGTATGGATTGGCAAAACTCTTTATAGGATGGCCTATGTGAACAACAATAATTATCTCGAGCTTGCTAAATTAGACTACAACAATTGCCAAGCACAGCATCTAACAGAGTGGGGGANAATTCAGAAGTGGTACTCTGAATCTAGGTTGGGAGAGTTTGGATTNAGCAGAAGGGGTCTTCTGTTGGCCTATTTTTTGGCAGCAGCAAGCATATTTGAGCCTGAAAAGTCTCATCAGAGGCTTGCATGGGCCAAAACCACAGCCCTGCTTGAGACAATCACATCCTTTGTTACTGATGCACAAATGAGGAAAGATTTCGTCAAAAAATTCAGTGAATGTATCAACAGGCAAGACTACTCCATTGGCTGGAGGTTGGGCATGAGCACAACAGGACATGGACTAGCTGAGATTTTGGTTGCAACCATAGATCAAATCTCTTGGGATATACTTGTGTCTCATGGTCATGAAATTGGATGTGACATGCACCATAGTTGGAAAAAGTGGCTTTCAAGTTGGCAAAGTGAAGGAGACAAATGTGAAGGACAAGCTGCAGAGCTTTTGGTACAGATAATAAACCTTAGCTCAGGGCATCGGATCTCTGAGGAGCAAGTGTTCAATCCACAATACCAGCACCTCCTTCAACTCACCAACACAGTCTGCCACACACTTCGTTGCTACCAAAAGGACAAGGAATCCGAGAGCATCAGCTGCGGTACGCACGAAAACAGCATCAGTACTACCCCAGAAGCAGAGTCAAAAATGCAAGAACTCGTGCAATTGGTGTTCCAAAATTCTCCAAATGGCATTGATTTCAATATCAAGAATACTTTCTTCACAGTGGCAAAGAGTTTTTACTATACAGCTTTCTGTGATTCGAGGACCATCAACTTCCATATTGCCAGAGTTCTCTTTGATAAAGTCGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00471	115313	124231	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04120	E5.5.1.13	EC:5.5.1.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0010333 terpene synthase activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000471s00019785.1	PF01397.16	Terpene_synth	294	492	1.30E-50
Glyur000471s00019785.1	PF03936.11	Terpene_synth_C	535	780	7.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.087
SRR1783600	control	0.085
SRR1783602	moderate drought stress	0.092
SRR1811619	moderate drought stress	0.100

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.303
DRR006520	Root Summer glycyrrhizin high producing strain	0.258
DRR006521	Root Winter glycyrrhizin high producing strain	0.270
DRR006522	Root Winter glycyrrhizin high producing strain	0.186
DRR006523	Root Summer glycyrrhizin low producing strain	0.609
DRR006524	Root Summer glycyrrhizin low producing strain	0.725
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.558
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.508

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.007
SRR2868004	Drought Stress (root)	34.848
SRR2967015	Control (root)	26.192

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.365
SRR9715740	Leaf	0.379
SRR9715741	Leaf	0.728
SRR9715739	Root	0.000
SRR9715742	Root	0.976
SRR9715743	Root	0.629

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.006
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.059
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.295
SRR8400027	Control - Root	4.270