Gene detail information of Glyur000471s00019781.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02760.2 | 4.00E-70 | RNI-like superfamily protein |
| NR | XP_006604440.1 | 0 | PREDICTED: F-box protein At4g02760-like isoform X1 [Glycine max] |
| Swissprot | tr|Q0WRC9|SKI17_ARATH | 3.00E-88 | F-box protein SKIP17 |
| trEMBL | tr|K7MYL0|K7MYL0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G33983.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00471 | 96944 | 102253 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.118 |
| SRR1783600 | control | 30.276 |
| SRR1783602 | moderate drought stress | 28.564 |
| SRR1811619 | moderate drought stress | 28.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.583 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.882 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.667 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.332 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.109 |
| SRR2868004 | Drought Stress (root) | 30.467 |
| SRR2967015 | Control (root) | 29.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.429 |
| SRR9715740 | Leaf | 42.547 |
| SRR9715741 | Leaf | 35.967 |
| SRR9715739 | Root | 11.958 |
| SRR9715742 | Root | 26.078 |
| SRR9715743 | Root | 21.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.330 |
| SRR8749028 | MeJA induced 9h | 28.645 |
| SRR8749029 | MeJA induced 9h | 18.163 |
| SRR8749030 | Uninduced | 18.011 |
| SRR8749031 | Uninduced | 8.537 |
| SRR8749032 | Uninduced | 8.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.794 |
| SRR8400027 | Control - Root | 40.923 |