Gene detail information of Glyur000471s00019776 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02720.1 | 7.00E-67 | |
| NR | XP_003622485.1 | 5.53E-123 | NF-kappa-B-activating protein [Medicago truncatula] |
| trEMBL | tr|A0A072TNN4|A0A072TNN4_MEDTR | 5.00E-123 | Ras-induced vulval development antagonist protein {ECO:0000313|EMBL:KEH18806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00471 | 76401 | 77663 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000471s00019776.1 | PF06047.6 | SynMuv_product | 295 | 396 | 8.40E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.890 |
| SRR1783600 | control | 6.963 |
| SRR1783602 | moderate drought stress | 4.563 |
| SRR1811619 | moderate drought stress | 4.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.371 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.793 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.879 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.420 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.620 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.443 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.911 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.144 |
| SRR2868004 | Drought Stress (root) | 6.797 |
| SRR2967015 | Control (root) | 6.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.221 |
| SRR9715740 | Leaf | 4.905 |
| SRR9715741 | Leaf | 2.640 |
| SRR9715739 | Root | 1.018 |
| SRR9715742 | Root | 4.692 |
| SRR9715743 | Root | 4.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.816 |
| SRR8749028 | MeJA induced 9h | 1.475 |
| SRR8749029 | MeJA induced 9h | 1.419 |
| SRR8749030 | Uninduced | 2.863 |
| SRR8749031 | Uninduced | 1.285 |
| SRR8749032 | Uninduced | 0.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.915 |
| SRR8400027 | Control - Root | 7.947 |