Gene detail information of Glyur000471s00019768 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63220.2 | 4.00E-147 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_007162451.1 | 0 | hypothetical protein PHAVU_001G153400g [Phaseolus vulgaris] |
| COG | YP_003204993.1 | 5.00E-13 | Kelch repeat-containing protein [Candidatus Methylomirabilis oxyfera] |
| Swissprot | tr|Q9M1W7|SKI30_ARATH | 0 | F-box/kelch-repeat protein SKIP30 |
| trEMBL | tr|V7CYT3|V7CYT3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34445.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00471 | 36609 | 40871 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000471s00019768.1 | PF01344.20 | Kelch_1 | 92 | 146 | 1.90E-07 |
| Glyur000471s00019768.1 | PF01344.20 | Kelch_1 | 149 | 194 | 4.70E-10 |
| Glyur000471s00019768.1 | PF01344.20 | Kelch_1 | 275 | 328 | 0.00018 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.974 |
| SRR1783600 | control | 4.933 |
| SRR1783602 | moderate drought stress | 6.701 |
| SRR1811619 | moderate drought stress | 6.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.988 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.760 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.895 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.498 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.784 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.915 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.959 |
| SRR2868004 | Drought Stress (root) | 15.168 |
| SRR2967015 | Control (root) | 12.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.332 |
| SRR9715740 | Leaf | 7.945 |
| SRR9715741 | Leaf | 9.242 |
| SRR9715739 | Root | 11.857 |
| SRR9715742 | Root | 11.846 |
| SRR9715743 | Root | 10.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.212 |
| SRR8749028 | MeJA induced 9h | 18.351 |
| SRR8749029 | MeJA induced 9h | 23.886 |
| SRR8749030 | Uninduced | 7.790 |
| SRR8749031 | Uninduced | 20.213 |
| SRR8749032 | Uninduced | 31.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.676 |
| SRR8400027 | Control - Root | 11.315 |