Gene detail

Gene detail information of Glyur000471s00019765

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G03100.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004505419.1	PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SA60\|PPR6_ARATH	Pentatricopeptide repeat-containing protein At1g03100, mitochondrial (Precursor)
trEMBL	tr\|A0A072UM39\|A0A072UM39_MEDTR	PPR containing plant protein {ECO:0000313\|EMBL:KEH30767.1}

Sequence

Transcript Sequence

>Glyur000471s00019765.1
CGTAAAGGATAGCCGAATTCATNAAAAAGGGAAGAGAGAAGGGGAGAAACAAAATTCAATCCAACGGCAAAAAAATTACTTCATGCAATTTTCGTGGAGTACCATTTCATACTCGTTAGTGTTTCCGTAAAAATAATTGCAAGATGAATATTTTTTCCATACACTACAGACTCGCCTCGGCTGTGGCCTCGTTGGCTGGCCTTCACTAACATCCGTCACAGCTCTTTGCCACCACCGCTGAACAAACCCATCTCACAGCTTATTTTCGATATCAAGTTCAAGATGCTTGCAATACAAAAGCTCAAAACAGGATCAGATCTGCCCTTTGTTTTATGTTTCATGGTTGCTAATTGCAATTATGGCACAGCCCAAGTTTCCAATAACAGAACTCTCCATTCTATTTTTAAGTTTGTTAGCCCTTGTATAGNCAAATCAAGTTCACAGGCACTTCTACTCGGATTTGAGAATAAGTTCATCCCTCAACGACTGTATATCTCAAGTATGGCTGAAAGAATCCTGGTCCAGGCTCGAGACCCAGCCAAAGTTAGTATGGAAATACAAGACGCTATCAATGGCACCCAATTAGATTATTCTTGGAAGTTATTTGAGCAGCATATCCACATGGATGGATTTCCTAGAAAATCTGTATTCAACATGCTTATAACTAGTTATGTGGAAAGCTTCGATATGCAATGGCTACAAAAAGCTTATGAATTGGTAGAACGTGCTATTGAGGATGGTAGACAAGACTTGTTAGAGAAGGAGGTGCTCATCTACCTTAGCCTTGGCCTTGCAAAAATCAGACTACCAGTTCTGGCATCAACGATTCTAAGAAAGATGATTGATATGGGGCATTTTCCTCCTGTCACTGCTTGGTCTGCAGTTTTGGCACACATGTCACAAACAGCAGATGGAAGTTACCTTGCTGCTGAGATGATTCTTGAAATAGGTTATTTGTTCCAAAACAACAGAGTGGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAACCAAACACCAATGCCTTTAACATCGCATTGGCAGGGTGTCTTGTATTTGAGAAATCTAGGAAGGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTATCAAAGCTGATGCAAACTTACTAATAACGATGGCGCGCATATATGAGAGAAATGGACGAAGAGAAGAGCTTAAGAAGCTGCAAAGGCACATAGAGGAAGCTCCAAATCTAAGTGATATACAGTTCCGGCAGTTCTATAATTGTTTGCTTACATGCCATTTGAAATTTGGGGATCTTGATTCTGCCTCAAACATGGTTTTGGAAATGCTCAGCAAAGCAAAGGAAGCAAGGAATTCTCTTGCAGCTGCCAAATTCACGATTGATGCTGCTAAAATTGATCATAGCTATTCTTCTGGACCGGCTTCTATGCATAGTTTGAGCAACGGTAAAGATTTGGACAGTTTCAAAAATAACCAGCTAATAAGAAATGTTGTCTTATCTTATGAGGAGTTCTCCAAAGATCGAAACTTCTTAAAACTTGAAGCAGAGTCAAAAGCTGTTCTTATTTCTTTATTAGCAAAGTTGCAGATGCAGGTTGATTTGATCACAACTGTACATGGTATATTGCAACCAACCGAAACAATTTATGTGAAATTGGTTAAAGCTTTTCTAGAGGCCGGCAAGACCAAAGATTTGGCATTGTTTCTTCTCAAGGCAGAAAGAGAAGATTCCCCATTTTCCAATGACAATTCAGCCTTGGTTCATGTTATTAATTTGTGCATTTCACTTGGATGGTTGGACCAAGCACACGATCTCCTCGATGAGATGCGTCTAGCTGGAGTTAGGACCGGTTCATCCGTATATGCTTCTCTTTTGAAAGCATATTGTCAAGCAAATAGGGCTGCAGATGTCACATCACTTCTGAGAGACGCTAAGAAGGCCGGTATCCAGCTTGATTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTGCTCCAGCAAGACACACCAGGGGCACTCCAACTATTTAAAGAGATGAAAGAAGCCAGGATTCCGAAAGTTAGTCAACAAAAATACTCAGGCATGCCCGCTAAAAGTGGTGCAGAGATGGACGAAGCNGCGCTGACGACGAAGCTGTTACAGGAAATCAAGGAAGGACAGAAGGTGGATTATGGAGTTCATGACTGGAATAACATAATCCACTTTTTCTGTAAGAAGAGACTAATGCAAGATGCAGAAAAGGCTCTAAAGAAAATGAGAAGCTTAGGCCACTCGCCTAATGCACAAACATTCCATTCTATGGTCACTGGGTATGCTGCCATTGGGGGGAAATATGTGGAGGTAACAGAGCTGTGGGGTGAGATGAAAGCTCTTGCTTCGTCGTCCTCCATGAGGTTTGATCAGGAGCTTCTCGATTCCGTGCTGTACACNTTTGTTAGGGGTGGATTCTTCACTCGCGCCAATGAAGTCGTCGCGATGATGGAGAAAGGAAAGATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATATCATAGAACACTTTACAAAGGCAAGGCTCCTAAATTTCAGACAGAATCCCAACTAAACAAAAGGGTAGCAGCCTTGGCTTTTAAAAGCTGGATAGGCTTGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00471	24301	27751	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000471s00019765.1	PF13812.1	PPR_3	323	348	0.043
Glyur000471s00019765.1	PF01535.15	PPR	494	519	0.11
Glyur000471s00019765.1	PF13812.1	PPR_3	525	555	0.49
Glyur000471s00019765.1	PF13812.1	PPR_3	560	589	0.63
Glyur000471s00019765.1	PF13041.1	PPR_2	634	677	5.40E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.993
SRR1783600	control	3.036
SRR1783602	moderate drought stress	2.871
SRR1811619	moderate drought stress	2.913

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.114
DRR006520	Root Summer glycyrrhizin high producing strain	4.016
DRR006521	Root Winter glycyrrhizin high producing strain	1.551
DRR006522	Root Winter glycyrrhizin high producing strain	1.487
DRR006523	Root Summer glycyrrhizin low producing strain	4.691
DRR006524	Root Summer glycyrrhizin low producing strain	4.732
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.003

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.898
SRR2868004	Drought Stress (root)	2.833
SRR2967015	Control (root)	3.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.950
SRR9715740	Leaf	1.818
SRR9715741	Leaf	1.138
SRR9715739	Root	0.838
SRR9715742	Root	1.516
SRR9715743	Root	1.513

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.369
SRR8749028	MeJA induced 9h	5.057
SRR8749029	MeJA induced 9h	4.310
SRR8749030	Uninduced	0.725
SRR8749031	Uninduced	0.667
SRR8749032	Uninduced	1.372

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.464
SRR8400027	Control - Root	3.689