Gene detail

Gene detail information of Glyur000471s00019762.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63250.1	3.00E-115	homocysteine methyltransferase 2
NR	XP_004493696.1	1.39E-174	PREDICTED: selenocysteine methyltransferase-like [Cicer arietinum]
COG	YP_005441993.1	6.00E-77	homocysteine S-methyltransferase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|P56707\|SMTA_ASTBI	3.00E-166	Selenocysteine methyltransferase
trEMBL	tr\|I1N9J8\|I1N9J8_SOYBN	1.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G34120.1}

Sequence

Transcript Sequence

>Glyur000471s00019762.1
TGATAATAACTAACTCGACCCGGGCGCACCCACAGACTGTATTACCGTAACTGGGGGGTCTCATTTGCGGCGTCAAAATGTCGTCGTCGTCGTCATTGATAGCTGATTTCCTCCGTCGGTCTGGCGGAACTGCCGTCATCGACGGCGGTTTGGCGACGGAGCTTGANCGCCATGGCGCTGACCTCAACGATCCCCTTTGGAGCGCCAAATGCCTCCTCTCCTCNCCTCACCTCATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAACCACAGCATCTTATCAAGCCACCATTCAAGGTTTCAAGGCAAAAGGCTTTTCTCATGAAGAAGGTGAAGCCTTGCTCAGAAAAAGTGTTGAGATTGCTCGTGAAGCCCGTGATTTGTATNATGAAAGATGTGCTGCTGCGTGCTCTTTGGGTGATGGGGCTGATGGTAGAATCCTCAAGCAACGTACTATCCTAGTTGCAGCGTCAGTGGGGAGCTATGGAGCTTATTTGGCTGATGGATCAGAGTACAGGGGCAAAATAGGAGAGGCTTATGCAGATCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCTAAGGATGGAATTAATGTTGTTAGTGGTGATTCTATAGTTGAATGTGGCTCCATTGCTGAATCGAGCAACAAGGTTGTTGCTGTTGGAATCAACTGTACCCCACCTAGATTTATACATGGTCTGATAGTTCTGCTTAAGAAGGTAGAACTTAAGGTGACTACAAAACCAATTGTTATATATCCAAACAGCGGGGAAACTTATGATGCTGACCACAAGGAGTGGGTGCAAAATACAGGTGTTACAGACGAAGATTTTGTCTCGTATGTAAGTAAATGGTGCGAGTTAGGGGCTTCCCTTGTAGGTGGCTGTTGCAGAACGACCCCAGCTACNATTAGAGGGATATACAAGATACTCTCCAGCAGTCAATCTGCTACCNTTGCCGCAAAGTGACTGCCCTGTCATCAGAAAGGAGGGAAATGTGCAAACCAANCTAATTTACATGTCAAGAAGACGGGCAAGCTGCACTGGGGTATGTTGCCACTTTGGGGCTTGGGCTGAGATGGGAAGATAAATATTGTTAGCCGCACTAAGTGCATGTTTGGATTCACTTTTATGAGAAGTGATTCCATAGACACATTGATTTTGACATGTTTGGTGTTATCGAGTAAAATTGATTTTGTCTCTAGAATGGATTCTAACTTAAAGCTAGGATTTGGAGTTTTTACCTCAAAACGTGATTTTGTCTCAAATTTATTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00471	5768	9367	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00547	mmuM, BHMT2	EC:2.1.1.10	Cysteine and methionine metabolism	map00270

Gene Ontology

molecular_function
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000471s00019762.1	PF02574.11	S-methyl_trans	19	161	4.30E-38
Glyur000471s00019762.1	PF02574.11	S-methyl_trans	158	297	4.60E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.395
SRR1783600	control	54.812
SRR1783602	moderate drought stress	51.726
SRR1811619	moderate drought stress	51.348

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.794
DRR006520	Root Summer glycyrrhizin high producing strain	36.482
DRR006521	Root Winter glycyrrhizin high producing strain	50.000
DRR006522	Root Winter glycyrrhizin high producing strain	47.976
DRR006523	Root Summer glycyrrhizin low producing strain	39.610
DRR006524	Root Summer glycyrrhizin low producing strain	39.305
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.177

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.401
SRR2868004	Drought Stress (root)	23.819
SRR2967015	Control (root)	28.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.696
SRR9715740	Leaf	15.697
SRR9715741	Leaf	14.786
SRR9715739	Root	39.796
SRR9715742	Root	14.625
SRR9715743	Root	18.083

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.522
SRR8749028	MeJA induced 9h	23.479
SRR8749029	MeJA induced 9h	29.358
SRR8749030	Uninduced	19.798
SRR8749031	Uninduced	17.866
SRR8749032	Uninduced	22.792

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.567
SRR8400027	Control - Root	34.982