Gene detail

Gene detail information of Glyur000470s00020963.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12680.1	4.00E-145	floral homeotic protein (HUA1)
NR	XP_004517028.1	0	PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q941Q3\|C3H37_ARATH	3.00E-178	Zinc finger CCCH domain-containing protein 37
trEMBL	tr\|K7MCY1\|K7MCY1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G30265.1}

Sequence

Transcript Sequence

>Glyur000470s00020963.1
CGAACGAACCCAGCCAATTCCACTACTACACACCACACCACTGGTGTGACCAGTGAGTGAGTGAGTGAGAGAGAAAAGAGAAGCCACAAAAAGATAATAATAAAAATGCTTCCTAATTCTATGTGCTTCTCTCTCTTTCTCTCTCCCCTTTGTACTTCCTCCAGCAAGCAGCAATCACTCGCACTCATTTCATTTCGCTCTTTTGACTGAGCATATGTGAAGCAATTTCGTGACAGTAACATCCTTTTCTCATTTCATTTTTCTGTTAAATTAAAATTTATAAAAAAAAAAATGGAAAATCGCATCTACGNTTCTTCCTACAGCCCTACCAACTACAGAGTGGGAGGAACAGGAACATCCCCGACCCGATTCTACGACCCGGATACCATGTTCCTGTCCCATCACCACCGCACCACCGACGCCGCCCTCGCCGCCTACCGCTCCTCCTCCTCCGCCGCCGCCGATATCGACATTGCCCCGCCTGGAGTCGCTTCTAGAATCATCCCCTCCGCCACAACCGCCACCTTGCTCTCTCACTCTTCTACCTGGCCCGTCGCTAATGTCGGCGCTGCTTCCCTTGACCTCAAACGCTCTTCTGACGCGCTCTACTATCCAACCATTTTGAGTACAATTGGGCAAAATGAAGCTTGGTATTCTACAAACTCACTTGCCAAGCGCCCTAGATACGAAAGTGGAAGCAATTTGCCTATATATCCACAGAGACCAGGAGAGAAGGATTGTGCCCACTATATGCTCACGAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAACACTGTTACAAGTGAAACTCTTCCTGAGAAACCAGGAGAACCAGATTGTCCATACTTTATGAAAACTCAAAGATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGTTTCCTCTGAAAATGCTGACGTTTCTGGCTTACCCGAGAGGCCACTAGAGCCCCCGTGTGCGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTGCGTGTAAATTTCATCACCCCAAAGATATCCAGATTCAATTGTCTGACGAATTTAGTCATACTGTTGANCAGACACAAACAAATTCTATGTTGAACGGGGCAACAGGAGATACACAACCAATTAATCCTCTTGTATCTCCACAGTTGCATAATAGCAAAGGGCTTCCTGTGAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAATATGGTGCCACTTGCCGCTACAATCATCCCGACAGAAATGTAATTAATCCGTCTATTGCTGCATTGGGCCCTTCTGTTTTGGCTTCCTCAGCTNCTAATCTGAACATTGGAGTTATTAATCCAGCTGTTTATCAAGCTTTTGACCCCAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAGACTATCTATCCTCAGCGGCCTGGACAGATTGAATGCGATTACTATATGAAAACTGGTGTGTGTAAATTTGGGGAAAGATGCAAGTTTCATCACCCAATTGACCGCTCAGCACCATCGCTGTCAAAGCAGGCGTCGCAACCAACTGTTAAACTCACTCCTGCAGGGTTACCAAGAAGAGAGGGTTCTGTGATCTGTCCATATTATTTAAAAACTGGCACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCATCCACCACCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAACATCTACAACCAATGGAGAGGAAGCAGAAACCAACGAAAAGGTGTCTGATTCTTCTCCTGAGCAGCATTGAGATCTTGCATGAAATTTACTCTTTTATGTATGAGTCTCTTTCCGTCTTGTTTTGTTTCATATCATGATGATTTTAACAGCTGTGTCTGAAGAAGACCTGATTTATTTTTATGACAAATTTCTCTCTGGATTAGTATGAGTGCTCTCTTTTAATTTTAATGATCAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00470	137139	144257	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000470s00020963.1	PF00642.19	zf-CCCH	146	170	5.20E-08
Glyur000470s00020963.1	PF00642.19	zf-CCCH	197	223	1.20E-09
Glyur000470s00020963.1	PF00642.19	zf-CCCH	241	264	1.30E-09
Glyur000470s00020963.1	PF00642.19	zf-CCCH	317	340	1.70E-10
Glyur000470s00020963.1	PF00642.19	zf-CCCH	401	424	1.20E-10
Glyur000470s00020963.1	PF00642.19	zf-CCCH	454	478	1.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.916
SRR1783600	control	20.218
SRR1783602	moderate drought stress	20.663
SRR1811619	moderate drought stress	20.414

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.667
DRR006520	Root Summer glycyrrhizin high producing strain	23.523
DRR006521	Root Winter glycyrrhizin high producing strain	13.144
DRR006522	Root Winter glycyrrhizin high producing strain	12.871
DRR006523	Root Summer glycyrrhizin low producing strain	25.526
DRR006524	Root Summer glycyrrhizin low producing strain	25.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.876

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.949
SRR2868004	Drought Stress (root)	26.116
SRR2967015	Control (root)	24.846

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.802
SRR9715740	Leaf	15.253
SRR9715741	Leaf	16.434
SRR9715739	Root	14.119
SRR9715742	Root	15.186
SRR9715743	Root	14.127

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.593
SRR8749028	MeJA induced 9h	29.598
SRR8749029	MeJA induced 9h	24.924
SRR8749030	Uninduced	18.819
SRR8749031	Uninduced	10.068
SRR8749032	Uninduced	15.306

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.252
SRR8400027	Control - Root	25.635