Gene detail information of Glyur000470s00020960 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44300.1 | 4.00E-33 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | KEH19312.1 | 4.56E-68 | Lipid transfer protein [Medicago truncatula] |
| Swissprot | tr|O64864|YLS3_ARATH | 2.00E-41 | Protein YLS3 (Precursor) |
| trEMBL | tr|A0A072TPI6|A0A072TPI6_MEDTR | 2.00E-68 | Lipid transfer protein {ECO:0000313|EMBL:KEH19312.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00470 | 121214 | 122702 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000470s00020960.1 | PF14368.1 | LTP_2 | 15 | 91 | 6.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.937 |
| SRR1783600 | control | 8.916 |
| SRR1783602 | moderate drought stress | 9.491 |
| SRR1811619 | moderate drought stress | 10.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.575 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.129 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.009 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.717 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.959 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.462 |
| SRR2868004 | Drought Stress (root) | 230.551 |
| SRR2967015 | Control (root) | 40.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.388 |
| SRR9715740 | Leaf | 0.436 |
| SRR9715741 | Leaf | 1.253 |
| SRR9715739 | Root | 3.717 |
| SRR9715742 | Root | 10.133 |
| SRR9715743 | Root | 8.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.216 |
| SRR8749028 | MeJA induced 9h | 1.494 |
| SRR8749029 | MeJA induced 9h | 2.245 |
| SRR8749030 | Uninduced | 0.302 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.518 |
| SRR8400027 | Control - Root | 20.414 |