Gene detail information of Glyur000470s00020959 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44310.1 | 5.00E-52 | Calcium-binding EF-hand family protein |
| NR | XP_004511134.1 | 1.13E-80 | PREDICTED: uncharacterized protein LOC101504873 [Cicer arietinum] |
| trEMBL | tr|A0A072U0K6|A0A072U0K6_MEDTR | 3.00E-75 | Calcium-binding EF-hand protein {ECO:0000313|EMBL:KEH19310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00470 | 117387 | 117809 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000470s00020959.1 | PF13202.1 | EF-hand_5 | 28 | 47 | 3.10E-05 |
| Glyur000470s00020959.1 | PF13405.1 | EF-hand_6 | 75 | 100 | 1.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 124.981 |
| SRR1783600 | control | 124.516 |
| SRR1783602 | moderate drought stress | 175.924 |
| SRR1811619 | moderate drought stress | 175.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 239.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 237.713 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 794.309 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 775.999 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 190.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 190.199 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 231.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 226.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 126.184 |
| SRR2868004 | Drought Stress (root) | 180.192 |
| SRR2967015 | Control (root) | 168.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 239.294 |
| SRR9715740 | Leaf | 295.149 |
| SRR9715741 | Leaf | 236.006 |
| SRR9715739 | Root | 196.518 |
| SRR9715742 | Root | 124.376 |
| SRR9715743 | Root | 126.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 80.548 |
| SRR8749028 | MeJA induced 9h | 108.789 |
| SRR8749029 | MeJA induced 9h | 131.401 |
| SRR8749030 | Uninduced | 181.805 |
| SRR8749031 | Uninduced | 94.873 |
| SRR8749032 | Uninduced | 235.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 151.586 |
| SRR8400027 | Control - Root | 105.124 |