Gene detail

Gene detail information of Glyur000470s00020955

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46240.1	0	potassium channel in Arabidopsis thaliana 1
NR	XP_003530386.1	0	PREDICTED: potassium channel KAT1-like [Glycine max]
COG	YP_724331.1	3.00E-29	cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q39128\|KAT1_ARATH	0	Potassium channel KAT1
trEMBL	tr\|I1KW21\|I1KW21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G24960.1}

Sequence

Transcript Sequence

>Glyur000470s00020955.1
ATGCCAATTTCATTTGCCATGAAATTTTTCCAGAGGACTTGGGAGATGCTACTAATTGTTCTAGTCATTTACTCTGCATGGATATGCCCCTTTGAGTTTGCTTTTCTTCCTTATAAGCAAGACACACTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGCTGACATTCTTTGTTGCATATCTAGATAGCCATTCTTACCTTCTCATTGATGATCCCAAGAAAATTGCANTCAGCCTCCTCTTCACTGATCACAACAGTGATGAGATTGGCTTCAAAGTTCTTAACATGCTTCGGTTATGGCGTCTGAGACGAGTAACCTTGTTTGCTGTGCACTGTGCTGGATGCTTTAACTACCTGATAGCAGATAGGTACCCTGATCCAAAAAAGACCTGGATTGGTTCTGTGTACCCAAANTTCAAAGAGATGAGTCTTTGGGACAGATATGTGACAGCCATGTATTGGTCCATTGTCACACTCACTACCACTGGATATGGTGATTTGCATGCTGAAAACACAAGGGAGATGCTGTTTGATATCTTCTACATGATGTTCAACTTGGGACTAACAGCATATATCATTGGAAACATGACCAACCTTGTTGTCCACTGGACAAGCCACACCAGAAATTTTAGAGATACAGTGAGAGCAGCTTCAGAATTTGCATCAAGAAATCATCTTCCCCATGATATACAGGACCAAATATTGTCACACTTATGTCTGAGGTTCAAAACAGAAGGATTAAAGCAGCAAGAAACAATAAATGGCATGCCAAAGGCAATCCGTGCAAGCATTGCACACCACCTGTTTTTCCCTGTTGTGCAGAAGGCCTACCTCTTCCAGGGAGTTTCACATGACTTTCTTTTCCAACTGGTTACAGAAATGGAAGCTGAGTATTTCCCACCCAAAGAAGANGTTATACTACAAAATGAGTCTCCAACAGACCTTTACATGCTGGTTTCAGGGGCAGTGGATCTCATTCGCAATGTTGATGGCCATGATCAAGTTTTGAAGAAGGCAATTGCAGGAGATACATTTGGAGAGATTGGAGTTTTATACTATAGGCCACAGCCTTTCACTGTTCGGACCACAGAGCTATCTCAAATTCTAAGACTTAGCAGAACTTCATTAATGAATGCCATACATGCAAATCCAGGAGCAGCACCACTTATAATGAACAATCTTTTTATGAGGTTAAAGGGACAAGAAGAATTGGGTTTTGAGTATCCACCTATGGACCCTGGATTGGCTCTTCATGGAATGCATGATGGGAACAACACAAGGGGGTGTTCTTGCCATGCATGTACAAATAATCCACATGGGGAAGCCAGATTGCATGACATGATTCCTGAGGATGGAAAAAGAGATCTTTATGATGCTGTAGCACACAGAGAAGCAAATGAAAAGAACCTAAGTCCCATAAGATGGAAACAGAAAGCACAAGTAGACCAACGACAAAACAAGAGTTCAATGTGTCTTGAAAATGGGAAGACATTAGATGAACATATAATAGAGTTTNAGGAGCCAGATATCATTAGCCATGGTAGGAATGACCCAAACCAATTAGGAAAAGTATACACAAACTCCTATTCAAGTAACNATAACCATTCAAGTGAAAGAAAAGGAGAAGTAATCATCAATAAGAGAGTTACCATACACCATCTAGATAAAAAAAGAACTAGCATACAGGGACAGCATGGGAAGTTGATAATTCTACCTGATTCATTGGAAGAGCTGCTCAAGATTGTTGGAGAAAAGTTTGGATGCCCCAAGCCAACAAAAATAATTAATACAGAGAATGCAAAGATAGATGATATGTGTGTCATTCGAGATGGTGATCATCTCTTTTTCCTTTGTAATGACAGTGAAAATTTGAGCCCATAATCTTATGGAATACAGGTGCAAGTGTAGATATAAAGCTAGCTTCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00470	91388	96525	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005216 ion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000470s00020955.1	PF00520.26	Ion_trans	108	202	7.20E-13
Glyur000470s00020955.1	PF00027.24	cNMP_binding	304	390	4.80E-14
Glyur000470s00020955.1	PF11834.3	DUF3354	553	623	3.10E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.753
SRR1783600	control	0.791
SRR1783602	moderate drought stress	1.719
SRR1811619	moderate drought stress	1.751

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.115
DRR006520	Root Summer glycyrrhizin high producing strain	1.956
DRR006521	Root Winter glycyrrhizin high producing strain	0.184
DRR006522	Root Winter glycyrrhizin high producing strain	0.200
DRR006523	Root Summer glycyrrhizin low producing strain	1.072
DRR006524	Root Summer glycyrrhizin low producing strain	0.793
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.517
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.354
SRR2868004	Drought Stress (root)	1.162
SRR2967015	Control (root)	1.411

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.921
SRR9715740	Leaf	3.707
SRR9715741	Leaf	11.723
SRR9715739	Root	0.025
SRR9715742	Root	1.728
SRR9715743	Root	1.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.014
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.089
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.806
SRR8400027	Control - Root	0.411