Gene detail information of Glyur000470s00020954 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40770.1 | 1.00E-112 | prohibitin 3 |
| NR | XP_004511131.1 | 0 | PREDICTED: prohibitin-3, mitochondrial-like isoform X1 [Cicer arietinum] |
| COG | YP_002770974.1 | 4.00E-33 | hypothetical protein BBR47_14930 [Brevibacillus brevis NBRC 100599] |
| Swissprot | tr|O04331|PHB3_ARATH | 1.00E-172 | Prohibitin-3, mitochondrial |
| trEMBL | tr|I1KFR0|I1KFR0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G47520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00470 | 87547 | 88386 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000470s00020954.1 | PF01145.20 | Band_7 | 33 | 215 | 2.80E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 83.191 |
| SRR1783600 | control | 83.231 |
| SRR1783602 | moderate drought stress | 55.618 |
| SRR1811619 | moderate drought stress | 55.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 68.740 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 65.817 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.439 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.740 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 61.347 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 63.860 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.626 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 81.065 |
| SRR2868004 | Drought Stress (root) | 48.126 |
| SRR2967015 | Control (root) | 49.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 44.786 |
| SRR9715740 | Leaf | 57.860 |
| SRR9715741 | Leaf | 44.588 |
| SRR9715739 | Root | 73.098 |
| SRR9715742 | Root | 70.242 |
| SRR9715743 | Root | 71.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.033 |
| SRR8749028 | MeJA induced 9h | 33.022 |
| SRR8749029 | MeJA induced 9h | 27.690 |
| SRR8749030 | Uninduced | 4.440 |
| SRR8749031 | Uninduced | 1.948 |
| SRR8749032 | Uninduced | 7.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.375 |
| SRR8400027 | Control - Root | 66.085 |