Gene detail

Gene detail information of Glyur000470s00020950

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25150.1	7.00E-90	HAD superfamily, subfamily IIIB acid phosphatase
NR	XP_004511128.1	2.41E-148	PREDICTED: acid phosphatase 1-like [Cicer arietinum]
COG	YP_005845138.1	1.00E-27	Class B acid phosphatase [Ignavibacterium album JCM 16511]
Swissprot	tr\|P27061\|PPA1_SOLLC	1.00E-122	Acid phosphatase 1 (Precursor)
trEMBL	tr\|V7AIP8\|V7AIP8_PHAVU	5.00E-139	Uncharacterized protein {ECO:0000313\|EMBL:ESW05477.1}

Sequence

Transcript Sequence

>Glyur000470s00020950.1
CGGCACGTAACGTCGCGCCCCCTCTCTTGCAGCAGAGAGTTACTGTTCCACGAGGGAAAGGCATTTCTCTTTTCTTTTCTTTTTCCTTTTGTTTTCCTTTTCCTCCCATTGATTTTCCGTCCAATTGCAATCCCCATTCTTCACAAACTCAACATTGGAAAAATCCATTTCCCCATTGGTTTCTTTCTTTCTCATTAGTGTCATCAACAACAACAACAACAACAACCACGATGACTCTGTTGCGGCTCTTCCTGCTATTTTCTCTGCTCTCCATTTCCTTCTCTCACGAGAATCCAAATCATCATCAGCAACACGTGTTTCCGAGACCACTGATTCTAGAATATTCGGAAGTGGAGGAGGAGGAGGAGGTGAGGTTGAGGTGCACCAGTTGGAGATTCGCCGTGGAAGCAAACAACCTTAGCCCGTGGAAGACGGTTCCGAAGGAATGTGCGGAACACGTGAGGGAGTACATGACAGGGAAAGGATATGCTTACGATCTCGAAATGGTTTCGAAGGAGGCTTGGGAATATGCTAAGAGTGTGAAACTCGGCGATGATGGAAAGGACGCGTGGGTTTTCGACATTGATGANACACTCCTCTCTAATCTCCCCTATTATGCTGCACATGGATACGGGTTGGCGGTTTTTGACCATGAAAAGTTTGACGATTGGGTGGAGAAGGGTGTGGCACCAGCCATAGAACCAAGTTTAAAACTCTATGAAGATGTTTNGAATCTGGGGTTTAAGGTTGTTCTGCTTACCGGACGGAGTGAAAATCACAGGAATGTTACTGTTGATAATTTGATAAAAGCTGGGTTTAGGGATTGGCACCAGCTCATACTAAGATCCTCGGGTGATCGTGGGAAACTAGCTGTAATTTACAAATCGGAGAAGAGGAGTGAGATGGAGAAAGATGGATACAGGATTCTTGGAAATTCCGGTGACCAGTGGAGCGATTTATTAGGTTCTTCAGTATCTGTTCGATCCTTCAAGCTTCCAAATCCCATGTATTACATCCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00470	67547	70964	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003993 acid phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000470s00020950.1	PF03767.9	Acid_phosphat_B	45	262	3.50E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.725
SRR1783600	control	2.985
SRR1783602	moderate drought stress	1.626
SRR1811619	moderate drought stress	1.502

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.195
DRR006520	Root Summer glycyrrhizin high producing strain	8.767
DRR006521	Root Winter glycyrrhizin high producing strain	0.545
DRR006522	Root Winter glycyrrhizin high producing strain	0.425
DRR006523	Root Summer glycyrrhizin low producing strain	4.715
DRR006524	Root Summer glycyrrhizin low producing strain	4.931
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.893
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.961

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.874
SRR2868004	Drought Stress (root)	30.996
SRR2967015	Control (root)	25.164

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.817
SRR9715740	Leaf	10.866
SRR9715741	Leaf	33.773
SRR9715739	Root	8.167
SRR9715742	Root	9.038
SRR9715743	Root	11.256

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.548
SRR8749028	MeJA induced 9h	70.840
SRR8749029	MeJA induced 9h	44.252
SRR8749030	Uninduced	30.686
SRR8749031	Uninduced	25.972
SRR8749032	Uninduced	19.060

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.951
SRR8400027	Control - Root	20.201