Gene detail information of Glyur000470s00020946 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04890.1 | 2.00E-09 | HSP20-like chaperones superfamily protein |
| NR | KEH19288.1 | 1.65E-88 | hsp20/alpha crystallin family protein [Medicago truncatula] |
| Swissprot | tr|D9UC01|RTM2D_ARATH | 3.00E-10 | Inactive protein RESTRICTED TEV MOVEMENT 2 |
| trEMBL | tr|A0A072TR16|A0A072TR16_MEDTR | 6.00E-89 | Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:KEH19288.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00470 | 39708 | 42496 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.407 |
| SRR1783600 | control | 1.394 |
| SRR1783602 | moderate drought stress | 1.074 |
| SRR1811619 | moderate drought stress | 1.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.999 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.350 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.290 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.900 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.488 |
| SRR2868004 | Drought Stress (root) | 9.281 |
| SRR2967015 | Control (root) | 6.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.751 |
| SRR9715740 | Leaf | 0.429 |
| SRR9715741 | Leaf | 3.004 |
| SRR9715739 | Root | 0.029 |
| SRR9715742 | Root | 1.753 |
| SRR9715743 | Root | 1.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.603 |
| SRR8400027 | Control - Root | 2.795 |