Gene detail

Gene detail information of Glyur000470s00020945

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	3.00E-76	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	AET02720.2	0	cytochrome P450 family protein [Medicago truncatula]
COG	YP_003265754.1	1.00E-27	cytochrome P450 [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	3.00E-106	Geraniol 8-hydroxylase
trEMBL	tr\|G7L8J6\|G7L8J6_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:AET02720.2}

Sequence

Transcript Sequence

>Glyur000470s00020945.1
ATGGATTTAGTAAATTCCACACTTTCCTACCCTGTGGTGCTGTTTATTACATTCGCCGTAGTTCTCCTTCTTCGATCTCTTCTCTCAACAAGAACCAGCAAAACAAAGAAAAATAACCGCCTTCCACCAGGACCATCCCCTCTTCCCATAATCGGAAACCTCTTGGAGCTTGGCAACAGGCCCCACCATTCCCTGGCCCAATTATCCAACAAACACGGCCCAATAATGACGCTAAAGTTGGGCCAAGTAACCACCATAGTGATCTCCTCGGCCGACATGGCCAAAGAGGACGGTGAGGCGGTGGATGTTGGGAGGGTTGCTTTCAAGACAACGATTAANNTGTTNTCGAANACGTTTTTCTCGGCGGATTTCGTGCAAACCGCGGAGGAAGCTGGGGAGTACAAGGAGNTTGTCGTGAACATATTGAAGGAGGTTGGTGCTCCGAACTTGTCGGATTTTTTTCCGGCTCTGAGGCCTTTTGACTTGCAGGGGATTAGGAGAAGGTCCGTTGGTTATGTGAGGAAGGTGTTGACGATCTTCAGGAGGTTCGTTGGGGAACGGTTGGAGATGAGGGAGGGAAGTGGTGAGGCNTCCAATGATGATGTGCTTGATGCTNTGCTTAACATATCTAAGGAGAATGGTGGCAAGATAGAAATGGACAAAGATGAGATTGAGCACCTGTTACTGAACATATTTGTTGCGGGTACCGACACGACAACATANACACTAGAATGGGCAATGGCAGAGTTAATTCACAATCCAGAGATGATGTCAAAGGTGGAGAAGGAACTCGAGCAAGTCGTCGGCAAAGGCGTTCCTGTGGAAGAAACCGATGTTTCTAAACTCCCTTACTTACAAGCCGTAGATGTAGAAATCGGTGGCTACATCATCCCAAAAGATGCACAAGTGTTGGTAAACGCGTGGGTCATTAATAGGGACCCAACTAAATGGGAAAACCCCAATGTGTTTCTACCGGAGAGGTTCTTGGACTCAGAAATTGACATTAAGGGGCACCACTTTGAGCTAATTCCATTTGGGTCTGGACGAAGAATTTGNCCTGGTTTGCCTTTGGCCATTAGGATGTTGCCCTTGATGTTGGGGTCATTGGTCAATTGCTTTAATTGGAGACTTGAAGATGGCATAAAACTAGATGGCATGGATAAGGAGGATGAGTATGGGATTACTTTGGAAAAATCTCAACCGGTTCGAATTGTTCCTATCAAGTTAACCAAGCAATAATCTAGCATGTGCATGTATGTACGTGTGTATTGTTGTAAGGAAAATAAACAATCCAGGTAAAAGGGGTGTTTGTTGGAGTCTTTTTCTCTTTTGTCTACTTTTTTTTTACAANCAAATGTTAGTAAATTAGTATGTTGTGTTAGTNGAGAAGGTTTGAACTCATGACTTCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00470	31906	34273	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000470s00020945.1	PF00067.17	p450	42	97	2.90E-10
Glyur000470s00020945.1	PF00067.17	p450	93	288	2.70E-29
Glyur000470s00020945.1	PF00067.17	p450	289	384	2.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.345
SRR1783600	control	2.505
SRR1783602	moderate drought stress	0.609
SRR1811619	moderate drought stress	0.580

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.078
DRR006520	Root Summer glycyrrhizin high producing strain	0.184
DRR006521	Root Winter glycyrrhizin high producing strain	15.125
DRR006522	Root Winter glycyrrhizin high producing strain	14.914
DRR006523	Root Summer glycyrrhizin low producing strain	0.171
DRR006524	Root Summer glycyrrhizin low producing strain	0.239
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.725
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.229
SRR2868004	Drought Stress (root)	15.006
SRR2967015	Control (root)	5.271

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.410
SRR9715740	Leaf	14.516
SRR9715741	Leaf	76.577
SRR9715739	Root	1.284
SRR9715742	Root	8.643
SRR9715743	Root	7.231

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.952
SRR8749028	MeJA induced 9h	11.405
SRR8749029	MeJA induced 9h	2.060
SRR8749030	Uninduced	22.128
SRR8749031	Uninduced	53.670
SRR8749032	Uninduced	13.965

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.422
SRR8400027	Control - Root	9.883