Gene detail information of Glyur000470s00020944 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29400.1 | 4.00E-73 | Protein of unknown function (DUF3531) |
| NR | XP_003628241.1 | 3.22E-152 | hypothetical protein MTR_8g046180 [Medicago truncatula] |
| trEMBL | tr|G7L8J3|G7L8J3_MEDTR | 1.00E-152 | Oxidoreductase/transition metal ion-binding protein {ECO:0000313|EMBL:AET02717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00470 | 23781 | 27940 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000470s00020944.1 | PF12049.3 | DUF3531 | 174 | 286 | 1.00E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.949 |
| SRR1783600 | control | 11.032 |
| SRR1783602 | moderate drought stress | 14.112 |
| SRR1811619 | moderate drought stress | 14.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.171 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.313 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.136 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.695 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.757 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.067 |
| SRR2868004 | Drought Stress (root) | 10.910 |
| SRR2967015 | Control (root) | 13.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.922 |
| SRR9715740 | Leaf | 34.876 |
| SRR9715741 | Leaf | 25.654 |
| SRR9715739 | Root | 1.632 |
| SRR9715742 | Root | 6.034 |
| SRR9715743 | Root | 6.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.634 |
| SRR8749028 | MeJA induced 9h | 9.877 |
| SRR8749029 | MeJA induced 9h | 5.383 |
| SRR8749030 | Uninduced | 9.921 |
| SRR8749031 | Uninduced | 5.451 |
| SRR8749032 | Uninduced | 4.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.659 |
| SRR8400027 | Control - Root | 25.723 |