Gene detail

Gene detail information of Glyur000469s00029361

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39830.1	6.00E-31	DA1-related protein 2
NR	XP_003600792.1	2.61E-50	LIM and UIM domain-containing [Medicago truncatula]
Swissprot	tr\|Q0WSN2\|DAR2_ARATH	5.00E-41	Protein DA1-related 2
trEMBL	tr\|G7JA19\|G7JA19_MEDTR	2.00E-50	Zinc ion-binding protein {ECO:0000313\|EMBL:AES71043.2}

Sequence

Transcript Sequence

>Glyur000469s00029361.1
GGCGGACAGGAACTGATGAAGACTACGCAAAGGCGCTTCAGGATCGCATGCACTCGTCTCTACACCCTCCATATGCCCCTTTACCTTTATATCCTCGGGGATATGGTATACCATCGCATATCAGAATATGTGGAGGGTGCAACAAGGAGATACTTTACGGAAATTGTTTGGGAGTTGAACATAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGTCATCGCCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAACATCCATATCACNAGTCCTGTTTTAGAGAATTAACACACCCTAAATGTGAAGTTTGCCATCATTATATACCTATAAATGTTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAATATGACAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCTCGGGGTGAAAGATATTTTAGATTGGAAGATGGAAGGATTTTGTGCTTCGAGTGCATGGAATCTGCTATAACAGATACTGGTGAATGTCAGCCTCTATATCATGCTATCAGAGACTATTACGAAGGAATAAATATGAGAATTGATCAACAAATCCCCATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATAGTTGGAGAGAAGAATGGTTTCCATCACTTGCCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAGACAGTCAGCAGTGTACATAGGTGGCCAAGAATTGGAGGCCATCGATTAATAGGGATGCGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTATGGTCTTCCAAGGTTACCGCAACCTTGATCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGAAACAGAAGTGATGTCAGGTTCTAGAACCATGCCATCAACATCATCATCATCAGCAGCAGCATCTTCCTCCTCCTACTCATCTAAGAAAGGTGTGAAATCCAAAGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCAAGCTTATGGTGGAGGCTTTAGAGCAGCTAATGTTGCTGTTAATAAATATGGTTTACGTTGTACTCTGGAGCATATTCGTTTAACTGGTCAGTTCCCACTGTAATAAGAACACGTTCCCTAAGGAGTTTGGATTGTAGTGTTTGGTGTTGGGTTGGTTCAAACCCAACACNGAAGGTTGGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00469	146745	152380	-

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000469s00029361.1	PF12315.3	DUF3633	3	109	1.80E-40
Glyur000469s00029361.2	PF00412.17	LIM	108	159	2.80E-07
Glyur000469s00029361.2	PF12315.3	DUF3633	217	267	5.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.143
SRR1783600	control	2.900
SRR1783602	moderate drought stress	2.861
SRR1811619	moderate drought stress	2.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.420
DRR006520	Root Summer glycyrrhizin high producing strain	3.520
DRR006521	Root Winter glycyrrhizin high producing strain	0.559
DRR006522	Root Winter glycyrrhizin high producing strain	0.485
DRR006523	Root Summer glycyrrhizin low producing strain	5.267
DRR006524	Root Summer glycyrrhizin low producing strain	5.312
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.561
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.815

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.704
SRR2868004	Drought Stress (root)	5.714
SRR2967015	Control (root)	8.270

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.859
SRR9715740	Leaf	6.563
SRR9715741	Leaf	10.494
SRR9715739	Root	2.801
SRR9715742	Root	6.318
SRR9715743	Root	3.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.302
SRR8749028	MeJA induced 9h	3.858
SRR8749029	MeJA induced 9h	2.622
SRR8749030	Uninduced	0.864
SRR8749031	Uninduced	1.013
SRR8749032	Uninduced	1.127

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.722
SRR8400027	Control - Root	4.689