Gene detail

Gene detail information of Glyur000469s00029348

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23160.1	2.00E-149	cysteine-rich RLK (RECEPTOR-like protein kinase) 8
NR	KHN01991.1	0	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]
Swissprot	tr\|P10978\|POLX_TOBAC	6.00E-118	Endonuclease
trEMBL	tr\|A5BC87\|A5BC87_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81001.1}

Sequence

Transcript Sequence

>Glyur000469s00029348.1
ATGTATGCTGAGCATTCCAAGCTTGACATGCATGGACTGAAATGGGCCAGGTACACTCATGAAACACAAGATTGGCAGCAATGTGCAAAGTTGATTGGCTGTCACAGTAGATTGAAACAGGTTTGGGATGAGCAACATAGAAGTCTTGTAGAAGGTAGAGGAGCCATTGTGCTTCACAAGGGTTCTGCTGCCGTTGCATTCTTCATCTCTAATCTTCGATTCGTACTTCGCTCAGTTCGTTCTTTGATTGTACTTCTGCTCAAACTCAGTTCTTCGTCTATGGCAGACCTTGCAGCGAATCTGAATCTCCTCGCGGATTTCTTGAGTCCCTATTACATGCCTCAAAACGATAATCCAGGTTTGGTTTTCGTCACTACTCCGTTGAATGGTCAGAACTATCACCAATGGTCTCGATCGATGCTGTTGTGCCTCAGTTCGAAGAATAAACAAGGGTTTGTTGATGGAACCCTTCCTCGACCTCCGATCTGCGATCCAAATCAAGCAGTGTGGGATCGTTGCAACGCATTTGTTCTCTCGTGGCTCTTTCATGCGAGCATCTTGTGGATGAAGACCGCCTCTGCTATATGGGCTGATCTTCGCCACAGGTATTATCAGGGCAACATCTTCCACGTCTTTGCTCTACAAGAGGAAATTTACATGCACAAGCAAGGTGATGCTTTTATCACTACTTACTACACCTATCTCAAAGGTCTCTGGGAAGAGTTGAATGACTTCAATCCAATTCCGTCCTGCACCTGTCAAATTCCATGTACTTGTCAGTTAATTCCATCTTTTGTCTCATATAAAGAAAAGGAATATTTGATTAGCTTTTTAAAAGGACTCAATGGGCAGTACTCTGCAGTAAGGTCACATATTATGCTCATGCGTCCTCTTCCTGATATTCCTAGTGCCTTTGCTCTCCTTATCCAACAAGAACGGAAAATGAAGTCTGATTGTGAGGAGTCTCGAATTTTACTGAATGTTGTTGACACAAAGGGGAGAGGACAAGGCAACAATGCTGGAAGAGGCAATCAAGGTGGTAGAAATTCTATTGGCCGAGGCAAGAACAAGAAAGTTTGTTCCTATTGTCATAAAGATGGACACACAGTGGATAAGTGTTACAAGAAACATGGTTATCCACCAGGATATTTTGAGAGGTTTCAGAAATCTAAAACTGTGAACAACTGTGCTACTGAAGAAGATGTTGAAGATTTTTATCAAAAAAAAAAAGATGTTGAAGATGAGGAGGAAATTGTTGATCAGCAGCAACAAAAATCGACAGATTCAGGTACTCTCTTTACTGTTATGAACTCTGACAACTCCAAACACTGGATTGTAGACACCGGAGCCACTGATCACTGTCATAAAAGAATAAGGCCTGTCAATGTTAGGTTACCTGATGGATCTCAAATCACTACTCATACTGCTGGCACAATTTACTTCTCCAAGGATTTAGTCCTCACTGATGACAAGGATACATTGAGGACGATTGGTGTAGCTAGAGCTGTTGGTGGACTCTACACAATCTCCCCTCAAGATAGTTTTCAGTTTGCTCCTCATACTTTGAAATCTGAAACTTCTATGCACATTAAGTCTTTCATTTCTCTGGTTGAAACTCAACACAACACCAAAGTCAAGTGTGTAAGATCTGACAATGGCAAAGAATTCATGATTAGTGAGTTTTACAGGTCCAAGGGCATAGTTTATCAGACATCCTGTGTGGAAACACCACAGCAGAATGGAATTGTGGAGCACAAGCACCAACATTTCTTGATCAGCCATGCTGTCTTCCTTATCAACCGGTTGCCCACTCGGTTCCTTTCCAACAAATCTCCTTTTCAGGCCATGCATAAGAAATTGCCAGAAATTGATTCATTAAGAGTTTTTGGATGCCTTGCATTTGCTGCGACTCTCGCTGCCCAGAGGAAGAAGTTGGACCCGAGAGCTCGCAAATGTGTCCACTTGGGTTTCAAACCAGTAGACAACCAATATGAACCACACCCTGCTACACCACCAAACACACTTGCAGCATCACCTCCATTAAACAACCAAGAACCTGACCAATTACCACCCCCTAGACAGTCTACCCGAACTCGCAAACCACCCACTTACTTACAAGATTATCATTGTTCTTTATCCTCCTCATCCACTTCATCAAACGCGACCAAATACCCTCTCAATCAAGTCATATCTTATAACAACCTTTCCTCTACACAAAGACACTTCTCCCTCACTAACTCTTCCAATCCCGAACCAACATCTTATGAACAAGTTGTTCAACATGAGTGCTGGCAGCATGCCATTGATCAAGAGTTACAAGCTCTTACCAAGAATAAAACTTGGACTGTTACTTCTCTTCCTACTGGCAAGAGGGCCATTGGATGCAAATGGGTATTTAAAGTCAAATACAAAGCCGATGGTTCTTTTGAGCGCCACAAAGAACGTTTAGTTGCAAAAGGATTCACCCAAACAACTGGCCTTGATTACGTGGAGACGTTTAGTCCAGTGGTCAAAATGACTACCGTGCGTCTGCTAATGTCCTTGGCTGCATCACTCAATTGGCATTTACACCAATTGGAGGTCAACACGGCATTTCTTCATGGTGATTTAGTGGAAGAAGTCTACATGAAAGCTCCTCCAGGACTAGCTGTCACGGACCCTTCAATGGTTTGCAAATTGCAAAAGTCTCTTTATGGCTTGAAACAAGCAAGCTGTCAGTGGAATGTCAAGCTCACTGAAACCTTAATGTCCTCTGGTTATTTACAGTCACGAGCTGATCATTCTCTCTTCACCAAAAAGACTGCCTCTGGTTTTACAGCCATCTTGGTATATGTGGATGACCTTGTCCTCACAGGAAATGATCTATCTGAAATTCAGGCTGTCAAAGCCTCACTTGATCACAAGTTCAACATCAAAGATCTTGGTGATCTTAAGTATTTTTTAGGCTTTGAGATTGCTCGCTCACAATCTGGCCTTACTATATACCAAAAAAAGTACTCTTTGGACTTGTTGCAAGATACTGAAATGCTGGCTTCCAAACCTAGCACTACGCCGATGGATCCCGATATCAAACTCAGCAAACTTTCAGGTACCCCTATTGCTGATCCATCTAGCTATCGGAGACTTGTTGGCCGCCTCCTCTATTTGACTCACACTAGGCCGGATATAAGCTACGTTGTTAGCAAGTTAAGTCAGTTTATGGATGCTCCCTCTGATGTGCATCAGCAGGCTGCATTTTGGGTTCTTAAATACATCAAGTCTTCACCTGGACTTGGCTTGTTCTTTCCCACCGATTCAGACCTGTGCCTTAAGGGCTTCACTGACTCGGACTGGGGAGCATGTCCTGACACTAGGCATTCCGTTTCTGGTTTCTGCTTTTTCCTTGGGAATGCTCTTATCTCATGGAAAAGCCAGAAACAAACTGTGGTTTCTCGCTCTTCAGCTAAGGCGGAATACCGTGCACTGGCCCAAGGTACTTGTGAAGCACAATGGCTCCTCTACCTTCTACAAGACTTCTATGTTGCTCATCCCAAACCTGTTTCAATCTACTGTGACAGCCAATCAACTTTGCACATTGCTGCCAATCTTGTGTTTCATGAGTGTACTAAACACATTGAAATGGACTGTCACCTAGTTCGAGACAAAATCACTGCTGGCATCCTCCACCTACTGCCTGTTTCATCTCAAGAATAG

Protein Sequence

>Glyur000469s00029348.1
MYAEHSKLDMHGLKWARYTHETQDWQQCAKLIGCHSRLKQVWDEQHRSLVEGRGAIVLHKGSAAVAFFISNLRFVLRSVRSLIVLLLKLSSSSMADLAANLNLLADFLSPYYMPQNDNPGLVFVTTPLNGQNYHQWSRSMLLCLSSKNKQGFVDGTLPRPPICDPNQAVWDRCNAFVLSWLFHASILWMKTASAIWADLRHRYYQGNIFHVFALQEEIYMHKQGDAFITTYYTYLKGLWEELNDFNPIPSCTCQIPCTCQLIPSFVSYKEKEYLISFLKGLNGQYSAVRSHIMLMRPLPDIPSAFALLIQQERKMKSDCEESRILLNVVDTKGRGQGNNAGRGNQGGRNSIGRGKNKKVCSYCHKDGHTVDKCYKKHGYPPGYFERFQKSKTVNNCATEEDVEDFYQKKKDVEDEEEIVDQQQQKSTDSGTLFTVMNSDNSKHWIVDTGATDHCHKRIRPVNVRLPDGSQITTHTAGTIYFSKDLVLTDDKDTLRTIGVARAVGGLYTISPQDSFQFAPHTLKSETSMHIKSFISLVETQHNTKVKCVRSDNGKEFMISEFYRSKGIVYQTSCVETPQQNGIVEHKHQHFLISHAVFLINRLPTRFLSNKSPFQAMHKKLPEIDSLRVFGCLAFAATLAAQRKKLDPRARKCVHLGFKPVDNQYEPHPATPPNTLAASPPLNNQEPDQLPPPRQSTRTRKPPTYLQDYHCSLSSSSTSSNATKYPLNQVISYNNLSSTQRHFSLTNSSNPEPTSYEQVVQHECWQHAIDQELQALTKNKTWTVTSLPTGKRAIGCKWVFKVKYKADGSFERHKERLVAKGFTQTTGLDYVETFSPVVKMTTVRLLMSLAASLNWHLHQLEVNTAFLHGDLVEEVYMKAPPGLAVTDPSMVCKLQKSLYGLKQASCQWNVKLTETLMSSGYLQSRADHSLFTKKTASGFTAILVYVDDLVLTGNDLSEIQAVKASLDHKFNIKDLGDLKYFLGFEIARSQSGLTIYQKKYSLDLLQDTEMLASKPSTTPMDPDIKLSKLSGTPIADPSSYRRLVGRLLYLTHTRPDISYVVSKLSQFMDAPSDVHQQAAFWVLKYIKSSPGLGLFFPTDSDLCLKGFTDSDWGACPDTRHSVSGFCFFLGNALISWKSQKQTVVSRSSAKAEYRALAQGTCEAQWLLYLLQDFYVAHPKPVSIYCDSQSTLHIAANLVFHECTKHIEMDCHLVRDKITAGILHLLPVSSQE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00469	14062	18876	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015074 DNA integration

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000469s00029348.1	PF14244.1	UBN2_3	117	255	1.00E-36
Glyur000469s00029348.1	PF00665.21	rve	523	590	1.40E-11
Glyur000469s00029348.1	PF07727.9	RVT_2	778	1021	4.60E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.048
DRR006520	Root Summer glycyrrhizin high producing strain	2.990
DRR006521	Root Winter glycyrrhizin high producing strain	4.125
DRR006522	Root Winter glycyrrhizin high producing strain	4.001
DRR006523	Root Summer glycyrrhizin low producing strain	2.140
DRR006524	Root Summer glycyrrhizin low producing strain	1.787
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.526
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.382
SRR2868004	Drought Stress (root)	5.871
SRR2967015	Control (root)	5.445

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.279
SRR8749028	MeJA induced 9h	2.923
SRR8749029	MeJA induced 9h	1.952
SRR8749030	Uninduced	2.836
SRR8749031	Uninduced	1.680
SRR8749032	Uninduced	1.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.091
SRR8400027	Control - Root	0.002