Gene detail

Gene detail information of Glyur000468s00019638.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52630.1	0	O-fucosyltransferase family protein
NR	KHN01340.1	0	DUF246 domain-containing protein [Glycine soja]
Swissprot	tr\|Q8W486\|Y1491_ARATH	4.00E-38	Uncharacterized protein At1g04910
trEMBL	tr\|A0A072UG18\|A0A072UG18_MEDTR	0	GDP-fucose protein O-fucosyltransferase {ECO:0000313\|EMBL:KEH28694.1}

Sequence

Transcript Sequence

>Glyur000468s00019638.2
GGAAGAACCAAAATGGACAGAACAACGTAGAGCAGCAATTTCGTCACTGTGGTTCCATCCGCATCGCAATCTGAGAGAGAGAGAGAGAGATCATCTAATCATCACCGGTTCTGTGAAATCAAATGGTCGTTTTCTCTGTGAAACCCTTATTCAGCATTCTCATCGTCTCCCTCACTCTCCTTCTCGTTCTGGCATTGCTATCTCCTCCTTACCCTTTCTCCCAGAACCAGATTTCTGGAGAACCCTCACTAGGGGANGTGGATATATGGAGTGTTCGGAGACTTGTGGAATGGAGACCTTGCAATTGGTGGCTACAAGGGCATCAAACAGCTCTACCATTAGAAACCAATGGATATATCAGAGTGGATTGCTACGGGGGCCTCAATCAGATGCGAAGAGATTTCTGTGATGGTGTGGGTGTTGCTCGGCTGTTGAATGCAACGCTTGTCCTGCCAAAGTTTGAAGTGGCTTCATATTGGAATGAAACAAGGCAATTTTTCTTTCCATCTCTGTGGAACTGTTTTAATTTGCAATTTCTTATTGGTTGTGGTTTTGCGGATGTATTTGATGTAGACTACTTCATTCAACATATGAATGGCTTTGTCAAAGTCGTCAAAGAGTTACCACCAGAGATTGCATCAAAAGAACCTGTTCGAGTGGACTGTAGCAAACGAAAAGGCCAATTTGATTATGTTGAAAGCGTTCTTCCATCTNTGTTAAAACACAAATACATTTCAATCACACCTGCAATGTCCCAAAGAAGGGACAGATATCCTTTGTATGCAAAAGCTGCTCTCTGTCAAGCTTGTTACAAGGCGTTACGTCTCACCAAGTCCTTGGAAACGAAAGCCTCTAAGCTTCTAGACGCAATACCGAAACCCTTTTTGTCTCTCCATCTTCGTTTCGAGCCCGACATGGTTGCATACAGTCAGTGCCAGTACCCTGGCCTTTCTCCTGCTTCCGTCAAAGCCATCGAAGAAGCACAAGTGGACAGAAAACCNTGGACCGGAGAGTTAGCCCGCGTTTGGCGACAACGCGGGAAATGTCCCCTCACGCCTAATGAGACGGCTTTAATACTTCAATCTCTTTCCATTTCACCAACCACAAATATATACCTTGCAGCTGGGGATGGTCTTATGGAAATTGAAGGGTTAACAGATACTTACACCAACATATTCACCAAGTCTAGCCTTCTCAGTGGGGAAGACTTCACAAACATGCATGGCAATACAAAAGCTGCTTTGGATTATTACATATCTATTAATAGTGATTCATATATAGCTACATATTTTGGGAACATGGACAAGATGGTTGCAGCAATGAGAGCTTTCAAAGGGTTGTACAAAACTCTATTTTTAAGCAGAAGAGGATTTGCAGAATTAACCTCTCAGGGTCTGAAGGGGAAGGAGTTGATGCAAGCCCTATGGAAGGTTCATAGAGATGAGTTTGTCATGGGAAGAGGCTCTGCTCTGTCTGAGTGTTTTTGTGAATTNAAGTTGTGATTTTGGAACTCAGATTCATCACTTTTTTTTTTCTTTTGCATATTAATTTTAATTCTTTTCACCACGTGAAGTGCTAGTGTTTCATTTTTCAGGAAGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00468	104357	107553	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000468s00019638.2	PF10250.4	O-FucT	82	405	6.20E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.242
SRR1783600	control	8.430
SRR1783602	moderate drought stress	8.470
SRR1811619	moderate drought stress	8.474

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.561
DRR006520	Root Summer glycyrrhizin high producing strain	8.872
DRR006521	Root Winter glycyrrhizin high producing strain	8.277
DRR006522	Root Winter glycyrrhizin high producing strain	8.005
DRR006523	Root Summer glycyrrhizin low producing strain	7.017
DRR006524	Root Summer glycyrrhizin low producing strain	6.966
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.654
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.310
SRR2868004	Drought Stress (root)	12.315
SRR2967015	Control (root)	11.857

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.587
SRR9715740	Leaf	7.656
SRR9715741	Leaf	9.240
SRR9715739	Root	1.394
SRR9715742	Root	4.287
SRR9715743	Root	3.727

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.597
SRR8749028	MeJA induced 9h	19.027
SRR8749029	MeJA induced 9h	13.979
SRR8749030	Uninduced	14.332
SRR8749031	Uninduced	7.846
SRR8749032	Uninduced	6.975

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.035
SRR8400027	Control - Root	13.432