Gene detail information of Glyur000468s00019637 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29250.1 | 1.00E-41 | Alba DNA/RNA-binding protein |
| NR | XP_007135740.1 | 2.93E-68 | hypothetical protein PHAVU_010G154500g [Phaseolus vulgaris] |
| Swissprot | tr|O22969|Y2416_ARATH | 2.00E-54 | Uncharacterized protein At2g34160 |
| trEMBL | tr|V7AQA7|V7AQA7_PHAVU | 1.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:ESW07734.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00468 | 98922 | 101804 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000468s00019637.1 | PF01918.16 | Alba | 22 | 84 | 4.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.256 |
| SRR1783600 | control | 14.984 |
| SRR1783602 | moderate drought stress | 12.717 |
| SRR1811619 | moderate drought stress | 13.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.629 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.934 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.974 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.350 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.772 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.971 |
| SRR2868004 | Drought Stress (root) | 57.369 |
| SRR2967015 | Control (root) | 49.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.804 |
| SRR9715740 | Leaf | 62.842 |
| SRR9715741 | Leaf | 59.534 |
| SRR9715739 | Root | 11.586 |
| SRR9715742 | Root | 20.178 |
| SRR9715743 | Root | 23.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 146.434 |
| SRR8749028 | MeJA induced 9h | 60.656 |
| SRR8749029 | MeJA induced 9h | 102.204 |
| SRR8749030 | Uninduced | 69.795 |
| SRR8749031 | Uninduced | 42.620 |
| SRR8749032 | Uninduced | 63.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.161 |
| SRR8400027 | Control - Root | 64.670 |