Gene detail

Gene detail information of Glyur000468s00019628

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30933.1	9.00E-31	Carbohydrate-binding X8 domain superfamily protein
NR	XP_006586068.1	8.88E-119	PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Glycine max]
Swissprot	tr\|Q9M069\|E137_ARATH	1.00E-25	Glucan endo-1,3-beta-glucosidase 7 (Precursor)
trEMBL	tr\|I1KY13\|I1KY13_SOYBN	3.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G42200.1}

Sequence

Transcript Sequence

>Glyur000468s00019628.1
TCATCACNAACCAGCCCACAAACTAGGCTTAAAAATTCCAAACAATTCCTCCTTTACTTTGTTTTTCAACCCTCTTCCTTCCCCCACCTTTTCCCTCCTTTTGGCTCCTTCTCTTGCTTGAACACACACACCCCATGTCTCCCTTGTCAAATCTTCTCATTCTTTGTCTCTCAGACTTCACATAGTCTACCAATATATATATTTTTATTCACATATGATTAGCCCACAAAGCACCCTTTTTTCTCCTCCCCCAAAGATCACTCAATCACCATCTCTAGTTTATGATATCCTCATTTCTCTCTCCTTGCTTCCAAGGTAGAAATAGTATAATTTGGGAACCACATTGAAGAAGAAGCAAGAAAGAGGAGGAGAAAGTGCCCAAGCAGAAGAAGAAGCAAACAGAAGATGGAAAGGATACTACTACTTCTTGTACTGGGTCATTTCCTTTGTTCTGGTTCCAGTGGGGCAGAGAAGGAACCATATGGACATGTGAGTGTACAAAGGCGTGAAGAGAAACCACTAGAATTTACTGCCACTCAAAGGGATATTACCACTCCAATCACTACAATTCCCAACTTGGTTCCCACCACTTCAACAACAACATCTCCAATCCTGAATCCTAATTCCAACCCAGACACATTTTCTCCAGCCTCCACACTTCCAATCACCACTACTCCAACAACAACCACAGCAAATTCACCACCAGTGTCTTCTTCAGGTGCAAGCTGGTGTATTGCAAGCCCAAGTGCCTCACAGACATCATTACAAGTAGCATTGGACTATGCTTGTGGACATGGTGGTATTGATTGTTCAGCAATTCAACCTGGTGGTAGCTGTTACAACCCAAATTCTGTCCGTGACCATGCTTCTTATGCCTTCAATAAGTACTATCAGAAGAATCCTGTTCCAAATAGCTGCAATTTTGGTGGAGCTGCTGTCATCACTAACACTAACCCAAGCACTGGGACGTGTCAATATCCATCCACTAGCACTAGTTCATCACTCTTAAACACAACAAACACTAGCGGTGCAAATGTTTTTGGCTCAGTACCTGTACCTGCGAACCCCTCTGCCTCTGCTGCTGCTGCTGCTGCCACATCAAATAGCTTTGCACAAATTTGCCTCATTCTATGGGCAACAACAGCAATTATGGAAAAGAATCATATCCATCATGAATTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00468	58041	61216	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000468s00019628.1	PF07983.8	X8	108	177	6.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.172
SRR1783600	control	10.642
SRR1783602	moderate drought stress	4.585
SRR1811619	moderate drought stress	4.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.076
DRR006520	Root Summer glycyrrhizin high producing strain	2.730
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.992
DRR006524	Root Summer glycyrrhizin low producing strain	1.701
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.010
SRR2868004	Drought Stress (root)	5.901
SRR2967015	Control (root)	6.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.597
SRR9715740	Leaf	0.618
SRR9715741	Leaf	0.242
SRR9715739	Root	0.592
SRR9715742	Root	0.580
SRR9715743	Root	0.709

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.511
SRR8749028	MeJA induced 9h	0.114
SRR8749029	MeJA induced 9h	0.103
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.290
SRR8400027	Control - Root	11.856